Os06g0239600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF246, plant family protein.
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Os06g0239600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF246, plant family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.57 | 0.31 | 8.08 | -1.59 | 0.312 | -0.895 | 0.353 | 0.102 | -0.35 | 3.26 | 24.8 | 1425 | -- | -- |
| 43.58 | 0.307 | 8.07 | -1.56 | 0.317 | -0.889 | 0.347 | -- | -0.341 | 3.26 | 24.7 | 1428 | -- | -- |
| 43.97 | 0.309 | 8.08 | -1.59 | 0.314 | -0.889 | -- | 0.0614 | -0.348 | 3.28 | 24.8 | 1422 | -- | -- |
| 43.97 | 0.309 | 8.07 | -1.57 | 0.314 | -0.889 | -- | -- | -0.342 | 3.29 | 24.75 | 1424 | -- | -- |
| 48.09 | 0.323 | 8.07 | -1.59 | -- | -0.9 | -- | -0.0746 | -0.319 | -- | 24.1 | 2599 | -- | -- |
| 67.46 | 0.385 | 8 | -1.26 | 0.396 | -- | 0.369 | -- | -0.0307 | 3.31 | -- | -- | -- | -- |
| 67.9 | 0.386 | 8 | -1.27 | 0.398 | -- | -- | -- | -0.0329 | 3.34 | -- | -- | -- | -- |
| 48.1 | 0.323 | 8.07 | -1.62 | -- | -0.907 | -- | -- | -0.327 | -- | 24.13 | 2599 | -- | -- |
| 102.66 | 0.472 | 8 | -- | 0.339 | -0.396 | -- | -- | -0.0304 | 3.3 | 22.9 | 1211 | -- | -- |
| 76.82 | 0.41 | 8 | -1.25 | -- | -- | -- | -- | -0.0224 | -- | -- | -- | -- | -- |
| 110.34 | 0.491 | 7.97 | -- | 0.373 | -- | -- | -- | 0.108 | 3.35 | -- | -- | -- | -- |
| 108.02 | 0.484 | 8.01 | -- | -- | -0.451 | -- | -- | -0.0342 | -- | 22.5 | 893 | -- | -- |
| 118.18 | 0.507 | 7.97 | -- | -- | -- | -- | -- | 0.117 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.16 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 3 | 43.43 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 7 | 43.50 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 4 |
| 8 | 43.53 | temperature | 20 | 720 | > th | dose dependent | sin | 11 | NA |
| 12 | 43.63 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 16 |
| 16 | 43.68 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 8 |
| 25 | 43.75 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 13 |
| 52 | 43.90 | temperature | 25 | 1440 | < th | dose independent | rect. | 12 | 21 |
| 90 | 44.05 | temperature | 30 | 720 | < th | dose dependent | sin | 12 | NA |
| 132 | 44.22 | temperature | 25 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 154 | 44.30 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 155 | 44.30 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 6 |
| 160 | 44.31 | temperature | 25 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 162 | 44.31 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 6 |
| 168 | 44.32 | temperature | 25 | 1440 | < th | dose independent | no | NA | NA |
| 197 | 44.39 | temperature | 25 | 1440 | < th | dose independent | rect. | 4 | 23 |
| 247 | 44.48 | temperature | 25 | 1440 | > th | dose independent | rect. | 12 | 20 |
| 254 | 44.49 | temperature | 25 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 338 | 44.59 | temperature | 30 | 4320 | < th | dose dependent | rect. | 1 | 2 |
| 357 | 44.61 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 417 | 44.65 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 486 | 44.72 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 1 |
| 579 | 44.79 | temperature | 25 | 1440 | < th | dose independent | sin | 15 | NA |
| 596 | 44.80 | temperature | 25 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 727 | 44.89 | temperature | 25 | 1440 | > th | dose independent | rect. | 21 | 23 |
| 740 | 44.90 | temperature | 25 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 755 | 44.91 | temperature | 25 | 1440 | > th | dose independent | no | NA | NA |
| 866 | 44.98 | temperature | 25 | 1440 | > th | dose independent | rect. | 23 | 23 |