BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0239600 Os06g0239600|AK062674
(104 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G11990.1 | chr1:4046246-4049060 REVERSE LENGTH=591 133 2e-32
AT1G62330.1 | chr1:23046965-23050053 FORWARD LENGTH=653 125 6e-30
AT1G29200.2 | chr1:10208002-10210488 FORWARD LENGTH=612 111 9e-26
AT1G14970.1 | chr1:5162085-5164917 REVERSE LENGTH=563 50 2e-07
AT2G01480.1 | chr2:216980-220341 FORWARD LENGTH=568 47 2e-06
>AT1G11990.1 | chr1:4046246-4049060 REVERSE LENGTH=591
Length = 590
Score = 133 bits (335), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 60/83 (72%), Positives = 69/83 (83%)
Query: 18 MTDPGSQFSSLVQGYRMYYGGGDLPTIRPNKRRLASILLKNATMEWNEFETRVRKLIQQT 77
MTD GSQ SSLV GYR+YYGGG LPTIRPNKRRL+ ILLKN+T+EWN FE RVRK I+QT
Sbjct: 506 MTDSGSQLSSLVSGYRIYYGGGKLPTIRPNKRRLSDILLKNSTIEWNVFEKRVRKAIRQT 565
Query: 78 KQVHERPVARSIFRHPRCLDCMC 100
K V RP RS++R+PRC +CMC
Sbjct: 566 KHVFARPNGRSVYRYPRCKECMC 588
>AT1G62330.1 | chr1:23046965-23050053 FORWARD LENGTH=653
Length = 652
Score = 125 bits (313), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 66/86 (76%)
Query: 18 MTDPGSQFSSLVQGYRMYYGGGDLPTIRPNKRRLASILLKNATMEWNEFETRVRKLIQQT 77
MTD GSQ SSLV GYR+YYG G +PTIRPNKRR + ILLKN T+EW FE RVRK ++QT
Sbjct: 567 MTDSGSQLSSLVSGYRIYYGAGKMPTIRPNKRRFSDILLKNNTIEWKVFEQRVRKTVRQT 626
Query: 78 KQVHERPVARSIFRHPRCLDCMCRTE 103
K V RP RS++R+PRC +CMC +
Sbjct: 627 KHVLVRPTGRSVYRYPRCKECMCNED 652
>AT1G29200.2 | chr1:10208002-10210488 FORWARD LENGTH=612
Length = 611
Score = 111 bits (277), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 47/84 (55%), Positives = 64/84 (76%)
Query: 18 MTDPGSQFSSLVQGYRMYYGGGDLPTIRPNKRRLASILLKNATMEWNEFETRVRKLIQQT 77
MTD GSQ SSLV G+R YYG G PT+RPNK+RLA+IL + T++W FE RVRK++++
Sbjct: 527 MTDSGSQLSSLVSGFRNYYGNGQAPTLRPNKKRLAAILSDSETIKWKIFEDRVRKMVEEG 586
Query: 78 KQVHERPVARSIFRHPRCLDCMCR 101
+++ RP RSI+R PRC +CMC+
Sbjct: 587 QKLRTRPYGRSIYRQPRCPECMCK 610
>AT1G14970.1 | chr1:5162085-5164917 REVERSE LENGTH=563
Length = 562
Score = 50.1 bits (118), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 18 MTDPGSQFSSLVQGYRMYYGGGDLPTIRPNKRRLASILLKNATMEWNEFETRVRKL--IQ 75
+T G F + G+R Y GG TI+P+KR+LA +L N + W F+ ++ +
Sbjct: 470 VTTQGGNFPHFLMGHRRYLFGGHSKTIQPDKRKLA-VLFDNPKLGWKSFKRQMLSMRSHS 528
Query: 76 QTKQVHERPVARSIFRHPRCLDCMCR 101
+K + + SI+ P C DCMCR
Sbjct: 529 DSKGFELKRSSDSIYIFP-CPDCMCR 553
>AT2G01480.1 | chr2:216980-220341 FORWARD LENGTH=568
Length = 567
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 18 MTDPGSQFSSLVQGYRMYYGGGDLPTIRPNKRRLASILLKNATMEWNEFETRVRKL--IQ 75
+T G F + G+R Y GG TIRP+KR+LA IL N + W F+ ++ +
Sbjct: 469 VTTQGGNFPHFLMGHRRYMFGGHSKTIRPDKRKLA-ILFDNPNIGWRSFKRQMLNMRSHS 527
Query: 76 QTKQVHERPVARSIFRHPRCLDCMCR 101
+K + SI+ P C DCM R
Sbjct: 528 DSKGFELKRPNDSIYTFP-CPDCMSR 552
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.136 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,913,582
Number of extensions: 60527
Number of successful extensions: 211
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 5
Length of query: 104
Length of database: 11,106,569
Length adjustment: 74
Effective length of query: 30
Effective length of database: 9,077,785
Effective search space: 272333550
Effective search space used: 272333550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 104 (44.7 bits)