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Os06g0545900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF246, plant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.78 (0.0351) R2 : 0.377
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.969 (0.0911) R2dC : 0.161 R2C : 0.169
β3 : 0.764 (0.0652) R2dE : 0.2 R2E : 0.213
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0513 (0.0759) R2dN8 : 0.000973 R2N8 : 0.00692
σ : 0.653
deviance : 196.66
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C
peak time of C : 5.63
E
wheather : temperature
threshold : 20.53
memory length : 32
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 14.1
open length of G : 19.4

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
189.37 0.647 6.8 -0.518 0.993 0.79 0.346 0.00583 -0.00924 5.66 20.52 33 14.3 19.2
189.37 0.641 6.8 -0.518 0.994 0.789 0.345 -- -0.00971 5.66 20.6 32 14.2 19
189.66 0.641 6.8 -0.523 0.995 0.791 -- -0.0216 -0.0128 5.67 20.54 32 14.4 18.9
189.67 0.641 6.8 -0.518 0.996 0.791 -- -- -0.0114 5.67 20.54 32 14.3 19
238.86 0.72 6.81 -0.508 -- 0.78 -- -0.0533 0.031 -- 20.53 30 14.9 18.5
233.87 0.717 6.75 -0.366 1.13 -- 0.49 -- 0.248 3.76 -- -- -- --
234.58 0.717 6.75 -0.373 1.13 -- -- -- 0.245 3.79 -- -- -- --
230.37 0.707 6.81 -0.445 -- 0.826 -- -- 0.0234 -- 20.54 25 16.5 17.1
196.66 0.653 6.78 -- 0.969 0.764 -- -- 0.0513 5.63 20.53 32 14.1 19.4
304.9 0.816 6.75 -0.326 -- -- -- -- 0.275 -- -- -- -- --
238.24 0.722 6.74 -- 1.12 -- -- -- 0.287 3.79 -- -- -- --
235.88 0.715 6.79 -- -- 0.815 -- -- 0.102 -- 20.6 25 16.8 16.7
307.7 0.819 6.74 -- -- -- -- -- 0.311 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 187.40 wind 1 43200 < th dose dependent rect. 8 4
3 189.79 radiation 10 43200 < th dose dependent rect. 9 1
4 190.13 atmosphere 995 43200 < th dose independent rect. 15 1
6 190.52 atmosphere 995 43200 > th dose independent rect. 15 1
7 190.80 atmosphere 995 43200 < th dose dependent rect. 15 2
8 190.81 humidity 80 43200 < th dose dependent rect. 23 1
9 191.14 humidity 80 43200 < th dose dependent rect. 23 3
19 191.40 humidity 80 43200 < th dose dependent rect. 1 1
22 191.48 atmosphere 995 43200 > th dose independent rect. 14 7
23 191.49 wind 1 43200 < th dose independent rect. 8 3
25 191.49 humidity 80 43200 < th dose dependent rect. 21 8
31 191.64 atmosphere 995 43200 < th dose independent rect. 14 4
32 191.65 wind 9 43200 > th dose dependent rect. 13 20
46 191.83 humidity 80 43200 > th dose independent rect. 21 5
49 191.88 humidity 80 43200 < th dose independent rect. 21 4
53 191.93 wind 9 43200 > th dose dependent rect. 10 4
71 192.31 wind 1 43200 > th dose independent rect. 8 3
72 192.33 humidity 90 43200 < th dose dependent rect. 4 1
75 192.41 radiation 10 43200 > th dose independent rect. 9 1
78 192.48 atmosphere 995 43200 > th dose independent rect. 13 9
103 192.98 humidity 80 43200 < th dose independent rect. 24 1
122 193.53 humidity 80 43200 > th dose independent rect. 24 1
123 193.55 wind 9 43200 > th dose dependent sin 20 NA
127 193.59 temperature 20 30 > th dose independent rect. 14 19
139 193.84 wind 9 43200 > th dose independent rect. 6 8
147 193.94 wind 9 43200 > th dose dependent rect. 9 12
151 194.09 wind 9 43200 > th dose independent rect. 2 12
153 194.11 wind 1 43200 < th dose dependent rect. 2 1
155 194.14 wind 9 43200 > th dose dependent rect. 9 7
167 194.34 wind 9 43200 > th dose dependent rect. 9 10
181 194.48 humidity 90 14400 > th dose dependent rect. 21 2
192 194.66 wind 9 43200 > th dose independent rect. 18 20
193 194.67 temperature 20 270 > th dose independent rect. 24 8
223 195.12 wind 1 43200 < th dose dependent rect. 24 2
224 195.15 wind 9 43200 > th dose dependent rect. 9 19
231 195.23 radiation 30 14400 < th dose dependent rect. 23 6
239 195.35 wind 3 43200 < th dose independent rect. 2 1
242 195.38 temperature 20 270 > th dose independent rect. 13 17
260 195.54 temperature 20 10 > th dose independent rect. 4 18
272 195.64 wind 1 43200 < th dose independent rect. 24 2
274 195.66 humidity 80 43200 > th dose independent rect. 4 1
276 195.67 wind 3 43200 > th dose independent rect. 2 1
280 195.75 wind 1 43200 < th dose dependent rect. 11 1
281 195.78 wind 9 43200 > th dose independent rect. 20 18
284 195.82 humidity 80 43200 < th dose independent rect. 3 1
307 196.09 wind 9 43200 < th dose independent rect. 6 8
308 196.11 humidity 90 14400 < th dose independent rect. 18 1
315 196.23 temperature 20 270 > th dose independent rect. 1 18
323 196.31 wind 9 43200 < th dose independent rect. 2 12
330 196.38 radiation 30 4320 < th dose independent rect. 23 9
333 196.42 radiation 30 4320 < th dose independent rect. 7 1
350 196.59 wind 3 43200 < th dose dependent rect. 8 7
352 196.61 wind 3 43200 > th dose independent rect. 13 21
362 196.70 wind 9 14400 > th dose dependent rect. 18 17
366 196.73 wind 3 43200 > th dose independent rect. 13 18
372 196.77 wind 3 43200 > th dose independent rect. 9 22
378 196.84 wind 9 43200 > th dose dependent rect. 2 19
387 196.89 wind 9 43200 > th dose independent rect. 13 22
398 196.95 radiation 30 4320 < th dose independent rect. 19 13
399 196.96 temperature 20 270 > th dose independent rect. 24 21
404 197.02 wind 3 43200 > th dose independent rect. 19 22
409 197.04 wind 3 43200 < th dose independent rect. 13 21
428 197.12 wind 3 43200 < th dose dependent rect. 6 9
436 197.15 wind 3 43200 < th dose independent rect. 13 18
451 197.21 wind 9 43200 > th dose dependent rect. 17 23
459 197.24 wind 3 43200 < th dose independent rect. 19 22
460 197.24 wind 3 43200 > th dose independent rect. 6 23
470 197.28 wind 9 14400 < th dose independent rect. 18 3
475 197.29 wind 3 43200 > th dose independent rect. 2 22
479 197.31 wind 3 43200 < th dose independent rect. 9 22
492 197.36 atmosphere 995 43200 > th dose independent sin 20 NA
512 197.43 wind 3 43200 > th dose independent rect. 23 23
520 197.47 radiation 30 4320 < th dose independent rect. 16 16
531 197.51 wind 3 43200 > th dose independent no NA NA
533 197.51 wind 9 14400 > th dose dependent rect. 20 15
551 197.59 wind 3 43200 > th dose independent rect. 1 16
563 197.63 wind 3 43200 < th dose independent rect. 2 22
567 197.64 wind 9 43200 > th dose independent rect. 15 23
571 197.65 wind 3 43200 < th dose independent rect. 11 20
573 197.65 wind 7 43200 > th dose dependent rect. 13 1
576 197.66 wind 3 43200 > th dose independent sin 13 NA
577 197.66 wind 9 43200 < th dose independent rect. 13 1
581 197.67 wind 9 43200 < th dose independent rect. 18 20
590 197.69 wind 3 43200 < th dose independent rect. 20 1
602 197.71 wind 9 14400 > th dose dependent rect. 18 3
612 197.75 wind 3 43200 > th dose independent rect. 23 18
618 197.76 wind 3 43200 < th dose independent rect. 6 23
626 197.79 wind 3 43200 < th dose independent rect. 2 15
644 197.84 wind 9 43200 > th dose dependent rect. 20 23
651 197.86 wind 1 43200 > th dose independent rect. 14 1
653 197.87 wind 9 43200 > th dose independent sin 3 NA
659 197.89 wind 9 14400 > th dose independent rect. 19 2
678 197.95 wind 3 43200 < th dose independent rect. 23 23
700 197.99 wind 3 43200 < th dose independent no NA NA
702 197.99 wind 9 43200 > th dose dependent no NA NA
759 198.12 humidity 70 4320 < th dose dependent rect. 17 3
760 198.13 humidity 90 43200 < th dose independent rect. 13 2
763 198.13 humidity 70 4320 < th dose dependent rect. 17 14
779 198.17 wind 3 43200 < th dose independent rect. 23 18
785 198.18 atmosphere 995 43200 < th dose independent sin 20 NA
789 198.20 wind 3 43200 > th dose independent rect. 6 10
795 198.23 wind 3 43200 < th dose independent sin 13 NA
820 198.26 wind 1 43200 > th dose dependent rect. 13 18
825 198.28 wind 3 43200 > th dose independent rect. 4 13
847 198.34 wind 3 43200 > th dose independent rect. 16 13
870 198.40 humidity 90 14400 < th dose independent rect. 18 5
872 198.40 wind 3 43200 > th dose independent rect. 18 11
889 198.44 wind 9 14400 < th dose independent rect. 18 17
897 198.45 wind 9 43200 < th dose independent rect. 20 18
901 198.46 humidity 60 4320 < th dose dependent rect. 16 17
905 198.47 wind 9 43200 > th dose dependent rect. 20 20
910 198.49 wind 3 43200 < th dose independent rect. 4 13
925 198.52 wind 1 43200 < th dose dependent rect. 14 1
931 198.54 wind 9 43200 > th dose dependent rect. 15 23
935 198.55 wind 9 43200 < th dose dependent rect. 13 18
937 198.57 wind 3 43200 > th dose independent sin 1 NA
938 198.57 wind 3 43200 < th dose independent rect. 6 10
943 198.57 temperature 20 10 > th dose independent rect. 1 21
976 198.63 humidity 80 43200 > th dose independent sin 10 NA