BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0233400 Os06g0233400|AK061460
         (250 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0233400  Protein of unknown function DUF298 family protein   522   e-149
Os07g0631000  Protein of unknown function DUF298 family protein   102   3e-22

>Os06g0233400 Protein of unknown function DUF298 family protein
          Length = 250

 Score =  522 bits (1345), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 250/250 (100%), Positives = 250/250 (100%)

Query: 1   MHKLGRGSRDKVQQFMTITGASEKVALQALKASDWHLEGAFDFFYSQPQISLTNSRHLED 60
           MHKLGRGSRDKVQQFMTITGASEKVALQALKASDWHLEGAFDFFYSQPQISLTNSRHLED
Sbjct: 1   MHKLGRGSRDKVQQFMTITGASEKVALQALKASDWHLEGAFDFFYSQPQISLTNSRHLED 60

Query: 61  LYNRYKEPDVDMIMVEGVSQFCTDLQVDPQDIVMLVISWHMKAATMCEFTRQEFIGGLQS 120
           LYNRYKEPDVDMIMVEGVSQFCTDLQVDPQDIVMLVISWHMKAATMCEFTRQEFIGGLQS
Sbjct: 61  LYNRYKEPDVDMIMVEGVSQFCTDLQVDPQDIVMLVISWHMKAATMCEFTRQEFIGGLQS 120

Query: 121 IGVDSIEKLREKLPSLRAEIKDDHKFREIYNFAFAWAREKGQKSLALETALGMWQLLFAE 180
           IGVDSIEKLREKLPSLRAEIKDDHKFREIYNFAFAWAREKGQKSLALETALGMWQLLFAE
Sbjct: 121 IGVDSIEKLREKLPSLRAEIKDDHKFREIYNFAFAWAREKGQKSLALETALGMWQLLFAE 180

Query: 181 RHWPLIDHWCQFLQVRHNKAISRDTWSQLLEFVKTIDPQLSNYDEEGAWPYLIDEFVEYL 240
           RHWPLIDHWCQFLQVRHNKAISRDTWSQLLEFVKTIDPQLSNYDEEGAWPYLIDEFVEYL
Sbjct: 181 RHWPLIDHWCQFLQVRHNKAISRDTWSQLLEFVKTIDPQLSNYDEEGAWPYLIDEFVEYL 240

Query: 241 TENGFVQLRK 250
           TENGFVQLRK
Sbjct: 241 TENGFVQLRK 250



>Os07g0631000 Protein of unknown function DUF298 family protein
          Length = 301

 Score =  102 bits (253), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 77/124 (62%), Gaps = 7/124 (5%)

Query: 123 VDSIEKLREKL----PSLRA--EIKDDHKFREIYNFAFAWAREKGQKSLALETALGMWQL 176
           +D +E LR+ +    P L +  ++ D H+F   Y+F F  +RE GQK+++++ A+G W++
Sbjct: 50  IDGMEGLRDAIFSDIPKLMSALDLDDAHRFSIFYDFVFFISRENGQKNISVQRAVGAWRM 109

Query: 177 LFAERHWPLIDHWCQFLQVRHNKAISRDTWSQLLEFVKTIDPQLSNYDEEGAWPYLIDEF 236
           +   R W L+D WC F++      I+ D W QLL F + ++  L  YD +GAWP L+D+F
Sbjct: 110 VLNGRFW-LLDRWCNFVEKYQRYNITEDVWQQLLAFSRCVNEDLEGYDPKGAWPVLVDDF 168

Query: 237 VEYL 240
           VE++
Sbjct: 169 VEHM 172



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.136    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,837,906
Number of extensions: 292968
Number of successful extensions: 670
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 669
Number of HSP's successfully gapped: 2
Length of query: 250
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 152
Effective length of database: 11,918,829
Effective search space: 1811662008
Effective search space used: 1811662008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)