Os07g0631000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF298 family protein.
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Os07g0631000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF298 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.19 | 0.236 | 11.8 | -0.409 | 0.236 | 0.0519 | 0.26 | -1.45 | -0.173 | 3.28 | 19.6 | 7185 | -- | -- |
| 26.73 | 0.243 | 11.7 | 0.112 | 0.169 | -0.183 | 0.152 | -- | 0.00964 | 3.7 | 19.6 | 7185 | -- | -- |
| 25.38 | 0.235 | 11.8 | -0.418 | 0.239 | 0.0557 | -- | -1.46 | -0.174 | 3.61 | 19.9 | 7249 | -- | -- |
| 26.77 | 0.243 | 11.7 | 0.113 | 0.166 | -0.2 | -- | -- | 0.0116 | 4.15 | 19.9 | 7249 | -- | -- |
| 27.02 | 0.243 | 11.7 | -0.00554 | -- | -0.287 | -- | -0.891 | -0.00639 | -- | 19.8 | 7177 | -- | -- |
| 27.22 | 0.245 | 11.7 | 0.0752 | 0.231 | -- | 0.228 | -- | -0.021 | 3.32 | -- | -- | -- | -- |
| 27.37 | 0.245 | 11.7 | 0.0709 | 0.234 | -- | -- | -- | -0.0224 | 3.61 | -- | -- | -- | -- |
| 27.85 | 0.247 | 11.7 | 0.146 | -- | -0.334 | -- | -- | 0.0376 | -- | 19.9 | 7249 | -- | -- |
| 27.04 | 0.242 | 11.7 | -- | 0.231 | 0.125 | -- | -- | -0.0686 | 3.51 | 12.89 | 14313 | -- | -- |
| 30.42 | 0.258 | 11.7 | 0.0807 | -- | -- | -- | -- | -0.0162 | -- | -- | -- | -- | -- |
| 27.5 | 0.245 | 11.7 | -- | 0.236 | -- | -- | -- | -0.0303 | 3.61 | -- | -- | -- | -- |
| 28.38 | 0.249 | 11.7 | -- | -- | -0.303 | -- | -- | 0.0171 | -- | 19.9 | 7249 | -- | -- |
| 30.59 | 0.258 | 11.7 | -- | -- | -- | -- | -- | -0.0251 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.21 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 2 | 24.23 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 3 | 24.26 | radiation | 10 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 4 | 24.29 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 11 | 24.34 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 13 | 10 |
| 19 | 24.39 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 13 | 2 |
| 50 | 24.48 | atmosphere | 1005 | 14400 | < th | dose independent | sin | 18 | NA |
| 66 | 24.50 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 69 | 24.50 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 14 | 9 |
| 79 | 24.51 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 11 | 12 |
| 138 | 24.57 | atmosphere | 1005 | 14400 | > th | dose independent | sin | 18 | NA |
| 184 | 24.60 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 13 | 3 |
| 250 | 24.64 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 11 | 5 |
| 343 | 24.68 | radiation | 20 | 4320 | > th | dose dependent | rect. | 15 | 17 |
| 381 | 24.71 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 473 | 24.75 | atmosphere | 1005 | 14400 | < th | dose independent | no | NA | NA |
| 527 | 24.77 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 17 | 23 |
| 528 | 24.77 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 20 | 23 |
| 531 | 24.78 | atmosphere | 1005 | 14400 | > th | dose independent | no | NA | NA |
| 542 | 24.78 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 21 | 23 |
| 543 | 24.78 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 15 | 23 |
| 585 | 24.80 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 17 | 23 |
| 590 | 24.80 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 607 | 24.81 | wind | 3 | 43200 | < th | dose dependent | rect. | 22 | 2 |
| 612 | 24.82 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 8 |
| 629 | 24.83 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 6 |
| 650 | 24.84 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 683 | 24.87 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 8 |
| 694 | 24.87 | wind | 9 | 14400 | > th | dose dependent | rect. | 21 | 17 |
| 711 | 24.89 | wind | 3 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 730 | 24.89 | radiation | 10 | 4320 | > th | dose dependent | rect. | 16 | 15 |
| 741 | 24.90 | radiation | 30 | 4320 | > th | dose independent | rect. | 15 | 17 |
| 763 | 24.91 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 19 | 23 |
| 766 | 24.92 | wind | 3 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 806 | 24.95 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 4 |
| 832 | 24.97 | wind | 3 | 1440 | > th | dose independent | rect. | 8 | 2 |
| 848 | 24.98 | wind | 3 | 1440 | < th | dose independent | rect. | 8 | 2 |
| 863 | 24.98 | wind | 3 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 868 | 24.99 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 2 |
| 869 | 24.99 | wind | 3 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 874 | 24.99 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 13 |
| 888 | 25.00 | wind | 3 | 14400 | > th | dose independent | rect. | 1 | 13 |
| 895 | 25.00 | wind | 7 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 896 | 25.00 | temperature | 25 | 4320 | > th | dose dependent | rect. | 19 | 14 |
| 905 | 25.01 | wind | 3 | 14400 | < th | dose independent | rect. | 6 | 7 |
| 920 | 25.02 | wind | 3 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 950 | 25.03 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 953 | 25.04 | wind | 9 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 963 | 25.04 | wind | 3 | 14400 | < th | dose independent | rect. | 22 | 16 |
| 969 | 25.05 | wind | 3 | 14400 | > th | dose independent | rect. | 6 | 7 |
| 975 | 25.05 | wind | 3 | 14400 | > th | dose independent | rect. | 23 | 15 |
| 983 | 25.06 | wind | 9 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 984 | 25.06 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 985 | 25.06 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 1 |