BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0631000 Os07g0631000|AK066723
         (301 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G28970.1  | chr3:10987970-10989782 REVERSE LENGTH=296          184   5e-47
AT3G12760.1  | chr3:4054963-4056826 FORWARD LENGTH=251             97   1e-20

>AT3G28970.1 | chr3:10987970-10989782 REVERSE LENGTH=296
          Length = 295

 Score =  184 bits (467), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 91/186 (48%), Positives = 123/186 (66%), Gaps = 17/186 (9%)

Query: 39  TREGLAELSQVIDGMEGLRDAIFSDIPKLMSALDLD-DAHRFSIFYDFVFFISRENGQKN 97
           ++E + +L  +++     R++IF ++ KLMS LDL  D   F+ FYDFVFF+ RENGQKN
Sbjct: 45  SKEAITQLLYLVENKFQARNSIFDELFKLMSRLDLMVDFTEFTCFYDFVFFMCRENGQKN 104

Query: 98  ISVQRAVGAWRMVLNGRFWLLDRWCNFVEKYQRYNITEDVWQQLLAFSRCVNEDLEGYDP 157
           I++ RA+ AW++VL GRF LL+RWC+F+EK QR+NI+ED WQQ+LAFSRCV+E+LEGYD 
Sbjct: 105 ITISRAITAWKLVLAGRFRLLNRWCDFIEKNQRHNISEDTWQQVLAFSRCVHENLEGYDS 164

Query: 158 KGAWPVLVDDFVEHMHRIYNS-------CDCSSAM---------ESQLNISNTFGGINPL 201
           +GAWPVL+DDFVEHM+ I          C C             E   +      G+  +
Sbjct: 165 EGAWPVLIDDFVEHMYSILGPNKDTSLFCKCGDTESESCLYQEDEHHKDYRRPHTGLRNI 224

Query: 202 PGSKRK 207
           PG KRK
Sbjct: 225 PGLKRK 230



>AT3G12760.1 | chr3:4054963-4056826 FORWARD LENGTH=251
          Length = 250

 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 75/127 (59%), Gaps = 6/127 (4%)

Query: 53  MEGLRDAIFSDIPKLMSAL-----DLDDAHRFSIFYDFVFFISRENGQKNISVQRAVGAW 107
           + GL+      I KL   L     +L D  +F   Y+F F  ++E GQK++++  A+G W
Sbjct: 117 ISGLQALGVDSIGKLQEKLPFMRSELKDEQKFHEIYNFAFGWAKEKGQKSLALDTAIGMW 176

Query: 108 RMVLNGRFW-LLDRWCNFVEKYQRYNITEDVWQQLLAFSRCVNEDLEGYDPKGAWPVLVD 166
           +++   R W L+  WC+F++      I++D W QLL FSR V+  L  YD +GAWP L+D
Sbjct: 177 QLLFAEREWPLVTHWCDFLQDRHNKAISKDTWAQLLEFSRMVDPVLSNYDAEGAWPYLID 236

Query: 167 DFVEHMH 173
           +FVE+++
Sbjct: 237 EFVEYLY 243



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.138    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,004,765
Number of extensions: 309597
Number of successful extensions: 566
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 564
Number of HSP's successfully gapped: 2
Length of query: 301
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 203
Effective length of database: 8,419,801
Effective search space: 1709219603
Effective search space used: 1709219603
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)