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Os06g0233400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF298 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.9 (0.0149) R2 : 0.495
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.59 (0.036) R2dC : 0.298 R2C : 0.252
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.409 (0.0314) R2dN8 : 0.243 R2N8 : 0.198
σ : 0.281
deviance : 36.18
__
_____
C
peak time of C : 1.56
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
24.97 0.235 13.9 -0.0862 0.714 -0.862 0.184 0.33 0.296 1.44 23.2 28 -- --
25 0.235 13.9 -0.0444 0.724 -0.905 0.278 -- 0.303 1.41 23.15 25 -- --
24.96 0.234 13.9 -0.107 0.716 -0.839 -- 0.485 0.292 1.42 23.2 28 -- --
25.31 0.236 13.9 -0.0542 0.724 -0.909 -- -- 0.302 1.41 23.13 31 -- --
44.28 0.31 13.9 -0.359 -- -0.643 -- 1.17 0.183 -- 26.6 2419 -- --
35.35 0.279 13.9 0.143 0.588 -- 0.303 -- 0.426 1.54 -- -- -- --
35.71 0.28 13.9 0.133 0.588 -- -- -- 0.424 1.56 -- -- -- --
45.16 0.313 13.9 -0.203 -- -0.856 -- -- 0.25 -- 22.8 2432 -- --
25.38 0.236 13.9 -- 0.72 -0.888 -- -- 0.31 1.42 23.13 31 -- --
56.86 0.352 13.9 0.157 -- -- -- -- 0.437 -- -- -- -- --
36.18 0.281 13.9 -- 0.59 -- -- -- 0.409 1.56 -- -- -- --
44.64 0.311 13.9 -- -- -0.841 -- -- 0.257 -- 26.4 991 -- --
57.51 0.354 13.9 -- -- -- -- -- 0.42 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 23.20 wind 1.0 43200 < th dose dependent rect. 4 4
2 23.31 wind 1.0 43200 > th dose independent rect. 4 4
3 23.45 humidity 80.0 43200 > th dose dependent rect. 12 1
4 23.61 wind 1.0 43200 < th dose independent rect. 4 4
5 23.70 radiation 20.0 43200 > th dose independent rect. 9 1
6 23.72 wind 1.0 43200 < th dose dependent rect. 6 1
8 23.80 humidity 90.0 14400 > th dose dependent rect. 15 14
16 23.91 humidity 90.0 14400 > th dose dependent rect. 5 1
24 23.99 humidity 60.0 43200 < th dose dependent rect. 13 1
33 24.08 humidity 70.0 43200 > th dose independent rect. 10 1
34 24.08 temperature 25.0 270 < th dose dependent sin 13 NA
35 24.08 humidity 90.0 14400 > th dose dependent rect. 2 7
38 24.10 humidity 90.0 14400 > th dose dependent rect. 24 10
42 24.13 temperature 25.0 90 < th dose dependent sin 11 NA
44 24.13 humidity 90.0 14400 > th dose dependent sin 11 NA
57 24.17 temperature 25.0 90 < th dose dependent rect. 15 20
58 24.18 radiation 20.0 14400 > th dose dependent rect. 7 1
76 24.20 radiation 20.0 14400 > th dose independent rect. 6 2
90 24.21 humidity 70.0 43200 < th dose independent rect. 10 1
114 24.25 wind 1.0 43200 > th dose independent rect. 2 1
120 24.27 wind 9.0 43200 > th dose dependent rect. 18 1
147 24.30 radiation 20.0 43200 < th dose dependent rect. 13 1
164 24.33 precipitation 0.1 43200 > th dose independent rect. 7 3
171 24.33 temperature 25.0 90 < th dose dependent rect. 17 18
175 24.35 precipitation 0.1 43200 < th dose independent rect. 7 3
176 24.35 precipitation 0.1 43200 < th dose dependent rect. 7 3
180 24.36 humidity 70.0 43200 > th dose independent rect. 18 2
182 24.36 precipitation 0.1 43200 > th dose dependent rect. 7 3
188 24.38 wind 9.0 43200 > th dose independent rect. 18 1
194 24.39 humidity 80.0 43200 < th dose dependent rect. 8 1
195 24.39 humidity 80.0 43200 < th dose dependent rect. 11 1
200 24.40 wind 7.0 43200 < th dose independent rect. 10 2
213 24.41 temperature 25.0 270 < th dose dependent rect. 11 18
214 24.42 wind 7.0 43200 > th dose independent rect. 10 2
217 24.42 humidity 90.0 43200 < th dose dependent rect. 8 4
219 24.43 precipitation 0.1 43200 < th dose independent rect. 9 1
220 24.43 humidity 70.0 43200 > th dose independent rect. 5 7
221 24.43 precipitation 0.1 43200 < th dose dependent rect. 9 1
227 24.44 wind 9.0 43200 < th dose independent rect. 18 1
228 24.44 precipitation 0.1 43200 > th dose independent rect. 9 1
229 24.44 humidity 90.0 43200 > th dose independent rect. 9 2
231 24.44 humidity 70.0 43200 > th dose independent rect. 7 5
234 24.44 precipitation 0.1 43200 > th dose dependent rect. 9 1
245 24.46 temperature 25.0 270 < th dose dependent rect. 15 14
250 24.47 humidity 70.0 43200 > th dose independent rect. 4 10
259 24.48 radiation 30.0 43200 < th dose dependent rect. 9 1
260 24.48 temperature 20.0 4320 > th dose dependent rect. 9 2
264 24.48 temperature 25.0 270 < th dose dependent rect. 10 21
267 24.49 wind 1.0 43200 > th dose dependent rect. 5 1
305 24.53 humidity 70.0 43200 < th dose independent rect. 4 8
323 24.54 wind 3.0 43200 > th dose independent rect. 13 1
370 24.55 temperature 25.0 10 < th dose dependent rect. 16 16
371 24.55 temperature 25.0 90 < th dose dependent rect. 17 16
390 24.56 humidity 50.0 43200 > th dose dependent rect. 8 1
392 24.56 wind 7.0 43200 > th dose dependent rect. 10 3
404 24.58 wind 7.0 43200 > th dose independent rect. 9 4
407 24.58 wind 9.0 43200 < th dose dependent rect. 5 1
415 24.59 humidity 70.0 43200 < th dose independent rect. 17 18
437 24.62 humidity 90.0 43200 < th dose independent rect. 10 1
439 24.62 humidity 90.0 43200 > th dose independent rect. 9 5
454 24.63 humidity 70.0 43200 > th dose independent sin 2 NA
476 24.64 humidity 90.0 43200 > th dose dependent rect. 9 7
481 24.65 humidity 70.0 43200 < th dose independent rect. 18 2
483 24.65 temperature 20.0 14400 < th dose independent rect. 20 5
490 24.65 temperature 20.0 14400 > th dose dependent rect. 13 1
517 24.67 humidity 70.0 43200 < th dose independent sin 3 NA
530 24.68 temperature 30.0 14400 < th dose dependent rect. 8 1
539 24.69 humidity 70.0 43200 < th dose independent rect. 18 15
553 24.70 temperature 15.0 270 > th dose dependent sin 12 NA
561 24.71 temperature 25.0 43200 > th dose independent rect. 12 1
563 24.71 radiation 1.0 43200 > th dose independent rect. 13 2
572 24.71 radiation 1.0 43200 < th dose dependent rect. 23 6
577 24.72 radiation 1.0 43200 < th dose independent rect. 13 2
579 24.72 radiation 1.0 43200 < th dose independent rect. 11 3
583 24.72 humidity 70.0 43200 < th dose independent rect. 17 6
590 24.72 humidity 70.0 43200 > th dose independent rect. 3 17
594 24.72 radiation 1.0 43200 < th dose dependent rect. 13 2
595 24.72 radiation 1.0 43200 < th dose dependent rect. 11 4
596 24.72 temperature 20.0 14400 > th dose dependent rect. 8 6
608 24.73 radiation 1.0 43200 > th dose independent rect. 11 4
623 24.73 radiation 1.0 43200 < th dose dependent rect. 20 9
627 24.73 temperature 25.0 10 < th dose dependent rect. 14 18
628 24.73 humidity 60.0 43200 < th dose dependent rect. 13 20
632 24.74 radiation 20.0 43200 < th dose independent rect. 10 1
638 24.74 temperature 20.0 14400 > th dose independent rect. 20 6
664 24.75 humidity 70.0 43200 > th dose independent rect. 7 16
679 24.76 wind 3.0 43200 < th dose independent rect. 13 1
691 24.76 precipitation 0.1 43200 > th dose independent rect. 6 7
710 24.76 humidity 90.0 14400 > th dose dependent rect. 24 1
715 24.76 radiation 30.0 43200 < th dose dependent rect. 9 5
719 24.76 humidity 70.0 43200 < th dose dependent rect. 21 18
725 24.77 temperature 25.0 43200 < th dose independent rect. 11 1
746 24.77 humidity 70.0 43200 < th dose independent rect. 9 16
761 24.77 precipitation 0.1 43200 > th dose dependent rect. 6 7
777 24.78 humidity 90.0 43200 < th dose independent rect. 9 4
802 24.79 radiation 20.0 43200 > th dose independent sin 7 NA
819 24.79 humidity 70.0 43200 < th dose independent rect. 24 20
855 24.80 humidity 70.0 43200 > th dose independent rect. 17 18
856 24.80 humidity 70.0 43200 < th dose independent rect. 2 18
869 24.80 humidity 90.0 14400 > th dose dependent rect. 4 3
878 24.80 humidity 70.0 43200 < th dose dependent rect. 5 10
884 24.80 temperature 25.0 10 < th dose dependent rect. 12 20
900 24.81 humidity 70.0 43200 < th dose dependent sin 6 NA
928 24.82 humidity 70.0 43200 > th dose independent rect. 18 16
954 24.83 temperature 20.0 43200 < th dose independent rect. 21 1
992 24.84 radiation 10.0 43200 > th dose independent sin 10 NA