BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0232600 Os06g0232600|AK070471
(272 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0232600 Similar to Dehydroascorbate reductase 441 e-124
Os05g0116100 Dehydroascorbate reductase 292 2e-79
>Os06g0232600 Similar to Dehydroascorbate reductase
Length = 272
Score = 441 bits (1133), Expect = e-124, Method: Compositional matrix adjust.
Identities = 212/212 (100%), Positives = 212/212 (100%)
Query: 61 EPLEVCAKASLTVPDRLGDCPFTQRVLLTIEEKHLPYDIKLVDLANKPDWFLKISPEGKV 120
EPLEVCAKASLTVPDRLGDCPFTQRVLLTIEEKHLPYDIKLVDLANKPDWFLKISPEGKV
Sbjct: 61 EPLEVCAKASLTVPDRLGDCPFTQRVLLTIEEKHLPYDIKLVDLANKPDWFLKISPEGKV 120
Query: 121 PIVKLEEQWVADSDVITQAIEEKYPEPSLATPPEKASVGSKIFSTFIGFLKSKDPNDGTE 180
PIVKLEEQWVADSDVITQAIEEKYPEPSLATPPEKASVGSKIFSTFIGFLKSKDPNDGTE
Sbjct: 121 PIVKLEEQWVADSDVITQAIEEKYPEPSLATPPEKASVGSKIFSTFIGFLKSKDPNDGTE 180
Query: 181 QALLSELTSFDSYLKDNGPFINGETISAADLSLAPKLYHMEIALGHYKNWSVPDSLSHVK 240
QALLSELTSFDSYLKDNGPFINGETISAADLSLAPKLYHMEIALGHYKNWSVPDSLSHVK
Sbjct: 181 QALLSELTSFDSYLKDNGPFINGETISAADLSLAPKLYHMEIALGHYKNWSVPDSLSHVK 240
Query: 241 KYMKTIFSMDSFVKTIALQEDVIAGWRPKVMG 272
KYMKTIFSMDSFVKTIALQEDVIAGWRPKVMG
Sbjct: 241 KYMKTIFSMDSFVKTIALQEDVIAGWRPKVMG 272
>Os05g0116100 Dehydroascorbate reductase
Length = 213
Score = 292 bits (747), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 136/209 (65%), Positives = 172/209 (82%), Gaps = 1/209 (0%)
Query: 63 LEVCAKASLTVPDRLGDCPFTQRVLLTIEEKHLPYDIKLVDLANKPDWFLKISPEGKVPI 122
+EVC KA++ PD LGDCPF+QRVLLT+EEK +PY++KL+D+ NKPDWFLKISPEGKVP+
Sbjct: 3 VEVCVKAAVGHPDTLGDCPFSQRVLLTLEEKKVPYEMKLIDVQNKPDWFLKISPEGKVPV 62
Query: 123 VKLEE-QWVADSDVITQAIEEKYPEPSLATPPEKASVGSKIFSTFIGFLKSKDPNDGTEQ 181
+ +W+ DSDVITQ IEEKYP PSL TPPE ASVGSKIFS F FLKSKDPNDG+E+
Sbjct: 63 FNGGDGKWIPDSDVITQVIEEKYPTPSLVTPPEYASVGSKIFSCFTTFLKSKDPNDGSEK 122
Query: 182 ALLSELTSFDSYLKDNGPFINGETISAADLSLAPKLYHMEIALGHYKNWSVPDSLSHVKK 241
ALL+EL + + +LK +GPFING+ ISAADLSLAPKLYH+++AL H+K W +P+ L++V
Sbjct: 123 ALLTELQALEEHLKAHGPFINGQNISAADLSLAPKLYHLQVALEHFKGWKIPEDLTNVHA 182
Query: 242 YMKTIFSMDSFVKTIALQEDVIAGWRPKV 270
Y + +FS +SF+KT A +E +IAGW PKV
Sbjct: 183 YTEALFSRESFIKTKAAKEHLIAGWAPKV 211
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.134 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,590,665
Number of extensions: 314601
Number of successful extensions: 765
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 768
Number of HSP's successfully gapped: 2
Length of query: 272
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 173
Effective length of database: 11,866,615
Effective search space: 2052924395
Effective search space used: 2052924395
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)