Os06g0232600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Dehydroascorbate reductase.
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Os06g0232600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Dehydroascorbate reductase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.27 | 0.377 | 12.8 | -1.73 | 0.975 | 0.893 | 0.531 | 0.52 | -0.97 | 16.3 | 10.03 | 1596 | -- | -- |
| 64.66 | 0.375 | 12.8 | -1.74 | 0.985 | 0.873 | 0.595 | -- | -0.974 | 16.3 | 10.01 | 1596 | -- | -- |
| 65.02 | 0.376 | 12.8 | -1.72 | 0.975 | 0.881 | -- | 0.623 | -0.965 | 16.3 | 10.01 | 1598 | -- | -- |
| 65.55 | 0.377 | 12.8 | -1.74 | 0.971 | 0.881 | -- | -- | -0.983 | 16.3 | 10.01 | 1596 | -- | -- |
| 86.52 | 0.433 | 12.8 | -1.59 | -- | 1.12 | -- | 0.863 | -0.861 | -- | 19.37 | 419 | -- | -- |
| 81.37 | 0.423 | 12.7 | -1.56 | 1.07 | -- | 0.395 | -- | -0.764 | 16 | -- | -- | -- | -- |
| 81.82 | 0.424 | 12.7 | -1.56 | 1.07 | -- | -- | -- | -0.762 | 16 | -- | -- | -- | -- |
| 74.04 | 0.401 | 12.8 | -1.66 | -- | 1.24 | -- | -- | -0.833 | -- | 4.629 | 539 | -- | -- |
| 121.99 | 0.514 | 12.8 | -- | 0.991 | 1.02 | -- | -- | -0.862 | 16 | 19.99 | 7562 | -- | -- |
| 144.47 | 0.562 | 12.7 | -1.6 | -- | -- | -- | -- | -0.79 | -- | -- | -- | -- | -- |
| 145.57 | 0.564 | 12.7 | -- | 1.1 | -- | -- | -- | -0.588 | 16 | -- | -- | -- | -- |
| 135.73 | 0.543 | 12.8 | -- | -- | 1.26 | -- | -- | -0.703 | -- | 7.112 | 516 | -- | -- |
| 211.91 | 0.679 | 12.7 | -- | -- | -- | -- | -- | -0.613 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 64.08 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 13 |
| 6 | 64.54 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 9 | 64.67 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 13 | 64.71 | temperature | 25 | 4320 | > th | dose dependent | rect. | 19 | 7 |
| 16 | 64.78 | temperature | 30 | 14400 | > th | dose independent | rect. | 18 | 15 |
| 17 | 64.78 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 3 |
| 29 | 64.86 | temperature | 30 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 33 | 64.90 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 39 | 64.94 | temperature | 30 | 14400 | < th | dose independent | rect. | 1 | 8 |
| 42 | 64.95 | temperature | 30 | 14400 | < th | dose independent | rect. | 3 | 6 |
| 46 | 64.96 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 9 |
| 50 | 64.99 | temperature | 30 | 14400 | < th | dose independent | rect. | 20 | 13 |
| 52 | 65.01 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 62 | 65.09 | temperature | 30 | 1440 | < th | dose independent | rect. | 19 | 16 |
| 72 | 65.13 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 7 |
| 76 | 65.14 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 13 |
| 79 | 65.16 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 5 |
| 85 | 65.20 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 10 |
| 86 | 65.20 | temperature | 25 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 110 | 65.30 | humidity | 80 | 1440 | > th | dose independent | rect. | 8 | 13 |
| 111 | 65.30 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 113 | 65.30 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 10 |
| 116 | 65.33 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 10 |
| 142 | 65.36 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 15 |
| 154 | 65.40 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 10 |
| 158 | 65.40 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 20 |
| 166 | 65.42 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 10 |
| 170 | 65.45 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 12 |
| 202 | 65.57 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 207 | 65.61 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 267 | 65.72 | radiation | 10 | 1440 | < th | dose dependent | sin | 21 | NA |
| 272 | 65.72 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 273 | 65.73 | temperature | 30 | 1440 | > th | dose independent | sin | 7 | NA |
| 275 | 65.73 | temperature | 25 | 4320 | > th | dose dependent | sin | 10 | NA |
| 290 | 65.78 | temperature | 30 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 292 | 65.79 | radiation | 10 | 1440 | > th | dose independent | sin | 23 | NA |
| 358 | 65.84 | temperature | 30 | 1440 | < th | dose independent | sin | 8 | NA |
| 409 | 65.92 | humidity | 80 | 1440 | > th | dose independent | sin | 20 | NA |
| 432 | 65.96 | temperature | 30 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 437 | 65.97 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 502 | 66.08 | radiation | 10 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 552 | 66.13 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 622 | 66.13 | humidity | 60 | 1440 | > th | dose dependent | rect. | 12 | 2 |
| 672 | 66.18 | humidity | 70 | 1440 | > th | dose independent | rect. | 12 | 20 |
| 674 | 66.18 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 675 | 66.18 | temperature | 25 | 90 | > th | dose dependent | sin | 2 | NA |
| 688 | 66.19 | temperature | 30 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 869 | 66.32 | temperature | 30 | 1440 | > th | dose dependent | sin | 7 | NA |
| 870 | 66.32 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 889 | 66.34 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 898 | 66.35 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 17 |
| 902 | 66.35 | temperature | 25 | 270 | > th | dose dependent | sin | 5 | NA |
| 904 | 66.36 | humidity | 80 | 1440 | < th | dose independent | sin | 21 | NA |
| 919 | 66.37 | temperature | 30 | 90 | < th | dose dependent | sin | 0 | NA |
| 928 | 66.38 | radiation | 10 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 970 | 66.43 | wind | 1 | 14400 | < th | dose dependent | rect. | 10 | 1 |