BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0232600 Os06g0232600|AK070471
(272 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G16710.1 | chr5:5483312-5484926 FORWARD LENGTH=259 357 3e-99
AT1G75270.1 | chr1:28250255-28251237 REVERSE LENGTH=214 284 4e-77
AT1G19570.1 | chr1:6773462-6774413 REVERSE LENGTH=214 277 5e-75
AT1G19550.1 | chr1:6767451-6767983 REVERSE LENGTH=154 164 5e-41
AT5G02790.1 | chr5:632877-634858 FORWARD LENGTH=236 58 5e-09
AT5G02780.1 | chr5:630957-632485 FORWARD LENGTH=238 53 2e-07
>AT5G16710.1 | chr5:5483312-5484926 FORWARD LENGTH=259
Length = 258
Score = 357 bits (917), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 165/211 (78%), Positives = 189/211 (89%)
Query: 62 PLEVCAKASLTVPDRLGDCPFTQRVLLTIEEKHLPYDIKLVDLANKPDWFLKISPEGKVP 121
PLE+C KAS+T P++LGDCPF Q+VLLT+EEK++PYD+K+VDL+NKP+WFLKISPEGKVP
Sbjct: 48 PLEICVKASITTPNKLGDCPFCQKVLLTMEEKNVPYDMKMVDLSNKPEWFLKISPEGKVP 107
Query: 122 IVKLEEQWVADSDVITQAIEEKYPEPSLATPPEKASVGSKIFSTFIGFLKSKDPNDGTEQ 181
+VK +E+WV DSDVITQA+EEKYPEP LATPPEKASVGSKIFSTF+GFLKSKD DGTEQ
Sbjct: 108 VVKFDEKWVPDSDVITQALEEKYPEPPLATPPEKASVGSKIFSTFVGFLKSKDSGDGTEQ 167
Query: 182 ALLSELTSFDSYLKDNGPFINGETISAADLSLAPKLYHMEIALGHYKNWSVPDSLSHVKK 241
LL ELT+F+ Y+KDNGPFINGE ISAADLSLAPKLYHM+IALGHYKNWSVPDSL VK
Sbjct: 168 VLLDELTTFNDYIKDNGPFINGEKISAADLSLAPKLYHMKIALGHYKNWSVPDSLPFVKS 227
Query: 242 YMKTIFSMDSFVKTIALQEDVIAGWRPKVMG 272
YM+ +FS +SF T A EDVIAGWRPKVMG
Sbjct: 228 YMENVFSRESFTNTRAETEDVIAGWRPKVMG 258
>AT1G75270.1 | chr1:28250255-28251237 REVERSE LENGTH=214
Length = 213
Score = 284 bits (726), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 133/209 (63%), Positives = 168/209 (80%), Gaps = 1/209 (0%)
Query: 63 LEVCAKASLTVPDRLGDCPFTQRVLLTIEEKHLPYDIKLVDLANKPDWFLKISPEGKVPI 122
L++C K ++ PD LGDCPF+QRVLLT+EEK LPY L+++++KP WFL ISPEGKVP+
Sbjct: 3 LDICVKVAVGAPDVLGDCPFSQRVLLTLEEKKLPYKTHLINVSDKPQWFLDISPEGKVPV 62
Query: 123 VKLEEQWVADSDVITQAIEEKYPEPSLATPPEKASVGSKIFSTFIGFLKSKDPNDGTEQA 182
VKL+ +WVADSDVI +EEKYPEPSL TPPE ASVGSKIF F+ FLKSKD NDG+E+A
Sbjct: 63 VKLDGKWVADSDVIVGLLEEKYPEPSLKTPPEFASVGSKIFGAFVTFLKSKDANDGSEKA 122
Query: 183 LLSELTSFDSYLKDN-GPFINGETISAADLSLAPKLYHMEIALGHYKNWSVPDSLSHVKK 241
L+ EL + +++LK + GPF+ GE I+A DLSLAPKLYH+E+ALGHYKNWSVP+SL+ V+
Sbjct: 123 LVDELEALENHLKTHSGPFVAGEKITAVDLSLAPKLYHLEVALGHYKNWSVPESLTSVRN 182
Query: 242 YMKTIFSMDSFVKTIALQEDVIAGWRPKV 270
Y K +FS +SF T A +E V+AGW KV
Sbjct: 183 YAKALFSRESFENTKAKKEIVVAGWESKV 211
>AT1G19570.1 | chr1:6773462-6774413 REVERSE LENGTH=214
Length = 213
Score = 277 bits (708), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 130/209 (62%), Positives = 166/209 (79%), Gaps = 1/209 (0%)
Query: 63 LEVCAKASLTVPDRLGDCPFTQRVLLTIEEKHLPYDIKLVDLANKPDWFLKISPEGKVPI 122
LE+C KA++ PD LGDCPF+QR LLT+EEK L Y I L++L++KP WFL ISP+GKVP+
Sbjct: 3 LEICVKAAVGAPDHLGDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQGKVPV 62
Query: 123 VKLEEQWVADSDVITQAIEEKYPEPSLATPPEKASVGSKIFSTFIGFLKSKDPNDGTEQA 182
+K++++WV DSDVI +EEKYP+P L TP E ASVGS IF TF FLKSKD NDG+E A
Sbjct: 63 LKIDDKWVTDSDVIVGILEEKYPDPPLKTPAEFASVGSNIFGTFGTFLKSKDSNDGSEHA 122
Query: 183 LLSELTSFDSYLKD-NGPFINGETISAADLSLAPKLYHMEIALGHYKNWSVPDSLSHVKK 241
LL EL + +++LK +GPFI GE +SA DLSLAPKLYH+++ALGH+K+WSVP+S HV
Sbjct: 123 LLVELEALENHLKSHDGPFIAGERVSAVDLSLAPKLYHLQVALGHFKSWSVPESFPHVHN 182
Query: 242 YMKTIFSMDSFVKTIALQEDVIAGWRPKV 270
YMKT+FS+DSF KT ++ VI+GW PKV
Sbjct: 183 YMKTLFSLDSFEKTKTEEKYVISGWAPKV 211
>AT1G19550.1 | chr1:6767451-6767983 REVERSE LENGTH=154
Length = 153
Score = 164 bits (415), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 83/160 (51%), Positives = 104/160 (65%), Gaps = 23/160 (14%)
Query: 111 FLKISPEGKVPIVKLEEQWVADSDVITQAIEEKYPEPSLATPPEKASVGSKIFSTFIGFL 170
F ISP+GKVP++K++++WV DSD +EEKYP+P L TP E ASVGS IF L
Sbjct: 15 FWDISPQGKVPVLKIDDKWVTDSDATVGILEEKYPDPPLKTPAEFASVGSNIFEALENHL 74
Query: 171 KSKDPNDGTEQALLSELTSFDSYLKDNGPFINGETISAADLSLAPKLYHMEIALGHYKNW 230
KS D GPFI GE +SA DLSLAPKLYH+++ALGH+K+W
Sbjct: 75 KSHD-----------------------GPFIAGERVSAVDLSLAPKLYHLQVALGHFKSW 111
Query: 231 SVPDSLSHVKKYMKTIFSMDSFVKTIALQEDVIAGWRPKV 270
SVP+S HV YMKT+FS+DSF KT ++ VI+GW PKV
Sbjct: 112 SVPESFPHVHNYMKTLFSLDSFEKTKTEEKCVISGWAPKV 151
>AT5G02790.1 | chr5:632877-634858 FORWARD LENGTH=236
Length = 235
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 93/204 (45%), Gaps = 17/204 (8%)
Query: 80 CPFTQRVLLTIEEKHLPYDIKLV--DLANKPDWFL-KISPEGKVPIVKLEEQWVADSDVI 136
CPF QRV +T K L IKLV DL N+P W+ K+ PE KVP ++ + + +S +
Sbjct: 37 CPFAQRVWITRNFKGLQEKIKLVPLDLGNRPAWYKEKVYPENKVPALEHNGKIIGESLDL 96
Query: 137 TQAIEEKYPEPSLATPPE---KASVGSKIFSTFIGFLKS------KDPNDGTEQALLSEL 187
+ ++ + PSL PE K G ++ F+K+ DP+ T L +
Sbjct: 97 IKYLDNTFEGPSLY--PEDHAKREFGDELLKYTDTFVKTMYVSLKGDPSKETAPVL--DY 152
Query: 188 TSFDSYLKDNGPFINGETISAADLSLAPKLYHMEIALGHYKNWSVPDSLSHVKKYMKTIF 247
Y D+GPF G+ +S D++ P + + L + + +++ I
Sbjct: 153 LENALYKFDDGPFFLGQ-LSLVDIAYIPFIERFQTVLNELFKCDITAERPKLSAWIEEIN 211
Query: 248 SMDSFVKTIALQEDVIAGWRPKVM 271
D + +T ++++ ++ K M
Sbjct: 212 KSDGYAQTKMDPKEIVEVFKKKFM 235
>AT5G02780.1 | chr5:630957-632485 FORWARD LENGTH=238
Length = 237
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 90/202 (44%), Gaps = 20/202 (9%)
Query: 80 CPFTQRVLLTIEEKHLPYDIKLV--DLANKPDWFL-KISPEGKVPIVKLEEQWVADSDVI 136
CPF QRV +T K L +IKLV DL N+P W K++P KVP ++ + +S +
Sbjct: 39 CPFAQRVWITRNLKGLQDEIKLVPIDLPNRPAWLKEKVNPANKVPALEHNGKITGESLDL 98
Query: 137 TQAIEEKYPEPSLATPPEKAS-----------VGSKIFSTFIGFLKSKDPNDGTEQALLS 185
+ ++ + PSL PE ++ V T G K DP T A
Sbjct: 99 IKYVDSNFDGPSLY--PEDSAKREFGEELLKYVDETFVKTVFGSFKG-DPVKETASAFDH 155
Query: 186 ELTSFDSYLKDNGPFINGETISAADLSLAPKLYHMEIALGHYKNWSVPDSLSHVKKYMKT 245
+ + D+GPF GE +S D++ P + ++ L + + ++ +++
Sbjct: 156 VENALKKF--DDGPFFLGE-LSLVDIAYIPFIERFQVFLDEVFKYEIIIGRPNLAAWIEQ 212
Query: 246 IFSMDSFVKTIALQEDVIAGWR 267
+ M ++ +T E V+ ++
Sbjct: 213 MNKMVAYTQTKTDSEYVVNYFK 234
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.134 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,014,333
Number of extensions: 217414
Number of successful extensions: 547
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 560
Number of HSP's successfully gapped: 6
Length of query: 272
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 175
Effective length of database: 8,447,217
Effective search space: 1478262975
Effective search space used: 1478262975
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)