BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0220800 Os06g0220800|AY739306
(282 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0220800 Thioredoxin domain 2 containing protein 535 e-152
Os02g0754900 Disulfide isomerase 339 2e-93
AY739307 200 1e-51
Os08g0412401 Thioredoxin domain 2 containing protein 141 5e-34
Os03g0806500 Thioredoxin domain 2 containing protein 103 2e-22
>Os06g0220800 Thioredoxin domain 2 containing protein
Length = 282
Score = 535 bits (1377), Expect = e-152, Method: Compositional matrix adjust.
Identities = 261/282 (92%), Positives = 261/282 (92%)
Query: 1 MRWWXXXXXXXXXXXXXXXXXXXXXCTRPSAAEAIVGSPEACRSPLRRPLGVTEGDDAIL 60
MRWW CTRPSAAEAIVGSPEACRSPLRRPLGVTEGDDAIL
Sbjct: 1 MRWWPALPLLLLAVAVAGAGDAAPVCTRPSAAEAIVGSPEACRSPLRRPLGVTEGDDAIL 60
Query: 61 ARAVNLLHANKEDFAAVLFYASWCPFSQECRLRFEKLACIFPTIRHLAIEESTVRLRTRY 120
ARAVNLLHANKEDFAAVLFYASWCPFSQECRLRFEKLACIFPTIRHLAIEESTVRLRTRY
Sbjct: 61 ARAVNLLHANKEDFAAVLFYASWCPFSQECRLRFEKLACIFPTIRHLAIEESTVRLRTRY 120
Query: 121 RYGIHGYPTLFLINSTVRVRYHGPRTVKSLAAFYNDVSGINPSMDPAVGDDNIEPKRDCE 180
RYGIHGYPTLFLINSTVRVRYHGPRTVKSLAAFYNDVSGINPSMDPAVGDDNIEPKRDCE
Sbjct: 121 RYGIHGYPTLFLINSTVRVRYHGPRTVKSLAAFYNDVSGINPSMDPAVGDDNIEPKRDCE 180
Query: 181 QEKCLFWSARTPENILQPDTYLTLAASFVILRLLYLFYPKITAFVKRTWSRRTLFTCLEQ 240
QEKCLFWSARTPENILQPDTYLTLAASFVILRLLYLFYPKITAFVKRTWSRRTLFTCLEQ
Sbjct: 181 QEKCLFWSARTPENILQPDTYLTLAASFVILRLLYLFYPKITAFVKRTWSRRTLFTCLEQ 240
Query: 241 GKHKFNRVYPSKQGNLHDGARHATAWASKSLASVSIGEPSTS 282
GKHKFNRVYPSKQGNLHDGARHATAWASKSLASVSIGEPSTS
Sbjct: 241 GKHKFNRVYPSKQGNLHDGARHATAWASKSLASVSIGEPSTS 282
>Os02g0754900 Disulfide isomerase
Length = 311
Score = 339 bits (869), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 172/272 (63%), Positives = 200/272 (73%), Gaps = 16/272 (5%)
Query: 26 CTRPSAAEAIVGSPEACRSPLRR--PLGVTEGDDAILARAVNLLHANKEDFAAVLFYASW 83
C P+AAE I+G C + RR P+GV EGD+ LA+A+ LLH NK+D+ AVLFYASW
Sbjct: 29 CPVPTAAEEILGPGGTCTTLDRRGDPVGVIEGDEVTLAKAITLLHMNKDDYIAVLFYASW 88
Query: 84 CPFSQECRLRFEKLACIFPTIRHLAIEESTVRLRTRYRYGIHGYPTLFLINSTVRVRYHG 143
CPFSQEC+ FE LA +FP+IRH A EES++R RYGIHG+PTLFL+NST+RVRYHG
Sbjct: 89 CPFSQECKPNFEILASLFPSIRHFAFEESSIRPSIISRYGIHGFPTLFLLNSTMRVRYHG 148
Query: 144 PRTVKSLAAFYNDVSGINPSMDPAV---GDDNIEPKRDCEQEKCLFWSARTPENILQPDT 200
PRTVKSLAAFY DVSG + SM D IE K+D EQE C FW AR+PE ILQ DT
Sbjct: 149 PRTVKSLAAFYRDVSGFDVSMTSEAVLHSVDGIELKKDAEQENCPFWWARSPEKILQQDT 208
Query: 201 YLTLAASFVILRLLYLFYPKITAFVKRTWSRRTL-----------FTCLEQGKHKFNRVY 249
YL LA +FVILRLLYL +PKI +F KR W R TL FT LEQ +HKF R+Y
Sbjct: 209 YLALATAFVILRLLYLLFPKIGSFAKRAWRRHTLFPNLVGVHEYFFTYLEQARHKFFRLY 268
Query: 250 PSKQGNLHDGARHATAWASKSLASVSIGEPST 281
PSK+GNL +GAR+ATAWASKSLASVSIGEPST
Sbjct: 269 PSKRGNLQEGARNATAWASKSLASVSIGEPST 300
>AY739307
Length = 264
Score = 200 bits (508), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 104/216 (48%), Positives = 137/216 (63%), Gaps = 12/216 (5%)
Query: 26 CTRPSAAEAIVGSPEAC---RSPLRRP--LGVTEGDDAILARAVNLLHANKEDFAAVLFY 80
C R AA A++ +C SP R +GV EGDD +L +AV L+ N+EDF A+LFY
Sbjct: 34 CPRQPAAAAVLPRQSSCPAAGSPGHRAHHVGVVEGDDFVLQKAVTLVLQNREDFVAILFY 93
Query: 81 ASWCPFSQECRLRFEKLACIFPTIRHLAIEESTVRLRTRYRYGIHGYPTLFLINSTVRVR 140
ASWCPFS+ R F+KL+ FPTI H + EES ++ R RYG+ +PTLFL+NST+RVR
Sbjct: 94 ASWCPFSKIFRTDFQKLSSFFPTIAHFSFEESRIKPRMLSRYGVRAFPTLFLVNSTMRVR 153
Query: 141 YHGPRTVKSLAAFYNDVSGINPSMDPAVGDDN-------IEPKRDCEQEKCLFWSARTPE 193
YHG RT+ SLA FY DV+G+NP A+ + IE + EQ LF AR+P+
Sbjct: 154 YHGSRTMNSLAMFYKDVTGMNPVSLDAISLERMEEVVNIIENDKKTEQGDSLFMFARSPD 213
Query: 194 NILQPDTYLTLAASFVILRLLYLFYPKITAFVKRTW 229
+L DT L LA+SFV++RLL PK+ A VK+ W
Sbjct: 214 RLLHQDTCLALASSFVLMRLLCFLLPKLNACVKQAW 249
>Os08g0412401 Thioredoxin domain 2 containing protein
Length = 140
Score = 141 bits (356), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 62/107 (57%), Positives = 81/107 (75%)
Query: 54 EGDDAILARAVNLLHANKEDFAAVLFYASWCPFSQECRLRFEKLACIFPTIRHLAIEEST 113
+GDD +L +AV L+ N+EDF A+LFYASWCPFS+ R F+KL+ FPTI H + EES
Sbjct: 16 QGDDFVLQKAVTLVLQNREDFVAILFYASWCPFSKIFRTDFQKLSSFFPTIAHFSFEESR 75
Query: 114 VRLRTRYRYGIHGYPTLFLINSTVRVRYHGPRTVKSLAAFYNDVSGI 160
++ R RYG+ +PTLFL+NST+RVRYHG RT+ SLA FY DV+G+
Sbjct: 76 IKPRMLSRYGVRAFPTLFLVNSTMRVRYHGSRTMNSLAMFYKDVTGM 122
>Os03g0806500 Thioredoxin domain 2 containing protein
Length = 301
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 110/226 (48%), Gaps = 24/226 (10%)
Query: 60 LARAVNLLHANKEDFAAVLFYASWCPFSQECRLRFEKLACIFPTIRHLAIEESTVRLRTR 119
+A+ +NL H +VLFYA+WCPFS + R FE L+ +FP I H +EES+
Sbjct: 67 IAKELNLRHRGVT--YSVLFYAAWCPFSSKFRPIFEALSTMFPQIYHFTVEESSAMPSLF 124
Query: 120 YRYGIHGYPTLFLINSTVRVRYHGPRTVKSLAAFYNDVSGINPSMDPAVGDDNIEPKRDC 179
RYG+ G+P + L+N T VRY GP+ + SL FY + +G +P + +++ +
Sbjct: 125 SRYGVRGFPAILLVNETTMVRYWGPKDLSSLVDFYKETTGFDP-----IAYFDVDHQDST 179
Query: 180 EQEKCLFWSARTPENILQPDTYLTLAASFVILRLLYLFYPKITAFVK----------RTW 229
+ + R+ I + + ++ LA F+IL++ F P + + +K
Sbjct: 180 GDFRPVTPGDRSLRKIAKDEPFVLLAVLFIILKVAAHFVPIVVSHLKTFLVVRVQNLNLG 239
Query: 230 SRRTLFTCLEQGKHKFNRV-------YPSKQGNLHDGARHATAWAS 268
RR LE+ + + +K +L GA +A AWAS
Sbjct: 240 IRRGSSQLLERALNVLDVKRLCSKLRLSNKTRDLRKGASNARAWAS 285
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.136 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,507,303
Number of extensions: 386362
Number of successful extensions: 988
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 985
Number of HSP's successfully gapped: 5
Length of query: 282
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 182
Effective length of database: 11,814,401
Effective search space: 2150220982
Effective search space used: 2150220982
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 155 (64.3 bits)