Os06g0220800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Thioredoxin domain 2 containing protein.
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Os06g0220800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Thioredoxin domain 2 containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58.14 | 0.358 | 10.3 | 0.633 | 0.473 | -1.27 | 0.404 | -0.00241 | 0.474 | 2.17 | 20.44 | 28 | -- | -- |
| 58.13 | 0.355 | 10.3 | 0.633 | 0.474 | -1.26 | 0.407 | -- | 0.474 | 2.17 | 20.49 | 28 | -- | -- |
| 58.51 | 0.359 | 10.3 | 0.605 | 0.475 | -1.07 | -- | 0.555 | 0.467 | 2.45 | 20.6 | 28 | -- | -- |
| 58.67 | 0.357 | 10.3 | 0.62 | 0.477 | -1.29 | -- | -- | 0.473 | 2.48 | 20.39 | 28 | -- | -- |
| 70.85 | 0.394 | 10.3 | 0.653 | -- | -0.699 | -- | 1.12 | 0.5 | -- | 20.19 | 25 | -- | -- |
| 69.1 | 0.39 | 10.3 | 0.839 | 0.383 | -- | 0.479 | -- | 0.563 | 2.18 | -- | -- | -- | -- |
| 69.76 | 0.391 | 10.3 | 0.824 | 0.394 | -- | -- | -- | 0.559 | 2.78 | -- | -- | -- | -- |
| 66.86 | 0.381 | 10.3 | 0.531 | -- | -1.24 | -- | -- | 0.431 | -- | 21.05 | 1280 | -- | -- |
| 67.96 | 0.386 | 10.3 | -- | 0.516 | -1.62 | -- | -- | 0.384 | 2.4 | 20.39 | 28 | -- | -- |
| 78.76 | 0.415 | 10.3 | 0.841 | -- | -- | -- | -- | 0.569 | -- | -- | -- | -- | -- |
| 87.66 | 0.438 | 10.3 | -- | 0.41 | -- | -- | -- | 0.468 | 2.79 | -- | -- | -- | -- |
| 72.85 | 0.398 | 10.3 | -- | -- | -1.66 | -- | -- | 0.339 | -- | 21 | 1365 | -- | -- |
| 97.41 | 0.461 | 10.3 | -- | -- | -- | -- | -- | 0.476 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 55.80 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 4 | 56.13 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 6 | 56.13 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 3 |
| 17 | 56.75 | temperature | 20 | 10 | < th | dose dependent | sin | 16 | NA |
| 41 | 57.19 | temperature | 20 | 10 | < th | dose dependent | rect. | 12 | 16 |
| 44 | 57.22 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 53 | 57.36 | temperature | 20 | 90 | < th | dose dependent | rect. | 11 | 17 |
| 60 | 57.42 | temperature | 20 | 10 | < th | dose dependent | rect. | 12 | 21 |
| 68 | 57.47 | temperature | 20 | 720 | > th | dose independent | rect. | 11 | 16 |
| 75 | 57.52 | temperature | 20 | 30 | < th | dose dependent | rect. | 15 | 13 |
| 83 | 57.56 | temperature | 20 | 90 | < th | dose dependent | rect. | 14 | 21 |
| 89 | 57.57 | temperature | 20 | 90 | < th | dose dependent | rect. | 12 | 23 |
| 98 | 57.61 | temperature | 20 | 30 | < th | dose dependent | rect. | 19 | 9 |
| 102 | 57.62 | temperature | 20 | 90 | < th | dose dependent | rect. | 18 | 17 |
| 127 | 57.72 | temperature | 20 | 30 | < th | dose dependent | rect. | 15 | 17 |
| 164 | 57.77 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 4 |
| 188 | 57.80 | temperature | 20 | 30 | < th | dose dependent | rect. | 19 | 13 |
| 196 | 57.81 | temperature | 20 | 90 | > th | dose independent | sin | 12 | NA |
| 197 | 57.81 | temperature | 20 | 720 | > th | dose independent | sin | 16 | NA |
| 198 | 57.81 | temperature | 20 | 1440 | < th | dose independent | rect. | 24 | 1 |
| 208 | 57.82 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 209 | 57.82 | temperature | 20 | 1440 | > th | dose independent | rect. | 24 | 3 |
| 227 | 57.84 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 8 |
| 296 | 57.94 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 8 |
| 357 | 58.06 | temperature | 20 | 1440 | < th | dose dependent | rect. | 23 | 17 |
| 358 | 58.06 | temperature | 20 | 1440 | < th | dose dependent | rect. | 12 | 18 |
| 440 | 58.23 | temperature | 20 | 30 | < th | dose dependent | rect. | 6 | 22 |
| 447 | 58.25 | temperature | 20 | 90 | < th | dose independent | rect. | 11 | 16 |
| 459 | 58.26 | temperature | 20 | 90 | < th | dose dependent | rect. | 21 | 14 |
| 465 | 58.27 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 11 |
| 476 | 58.28 | temperature | 20 | 30 | < th | dose dependent | rect. | 9 | 19 |
| 504 | 58.31 | temperature | 20 | 1440 | < th | dose dependent | sin | 7 | NA |
| 528 | 58.33 | temperature | 20 | 1440 | < th | dose dependent | rect. | 1 | 9 |
| 537 | 58.34 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 11 |
| 546 | 58.34 | temperature | 20 | 30 | < th | dose dependent | rect. | 18 | 22 |
| 552 | 58.35 | temperature | 20 | 30 | < th | dose dependent | no | NA | NA |
| 571 | 58.35 | temperature | 20 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 572 | 58.36 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 11 |
| 582 | 58.36 | temperature | 20 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 585 | 58.36 | temperature | 20 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 591 | 58.37 | temperature | 20 | 1440 | < th | dose dependent | rect. | 23 | 11 |
| 659 | 58.42 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 701 | 58.44 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 13 |
| 705 | 58.44 | temperature | 20 | 1440 | < th | dose dependent | no | NA | NA |
| 706 | 58.44 | temperature | 20 | 270 | < th | dose dependent | rect. | 23 | 1 |
| 718 | 58.45 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 724 | 58.45 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 15 |
| 770 | 58.47 | temperature | 20 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 819 | 58.49 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 14 |
| 832 | 58.49 | temperature | 20 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 884 | 58.52 | temperature | 20 | 90 | < th | dose independent | rect. | 19 | 8 |