BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0220800 Os06g0220800|AY739306
(282 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G34780.1 | chr1:12748835-12750124 REVERSE LENGTH=311 208 3e-54
AT4G08930.1 | chr4:5729511-5730724 FORWARD LENGTH=296 206 1e-53
AT3G03860.1 | chr3:992465-994315 FORWARD LENGTH=301 124 5e-29
AT5G18120.1 | chr5:5991385-5993696 FORWARD LENGTH=290 108 3e-24
AT2G47470.1 | chr2:19481503-19483683 FORWARD LENGTH=362 52 3e-07
>AT1G34780.1 | chr1:12748835-12750124 REVERSE LENGTH=311
Length = 310
Score = 208 bits (529), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 117/271 (43%), Positives = 168/271 (61%), Gaps = 18/271 (6%)
Query: 26 CTRPSAAEAIVG------SPEACRSPLR-RPLGVTEGDDAILARAVNLLHANKEDFAAVL 78
C SA ++I G S S R R + VTEGD+ L A++++H NK D+ A+L
Sbjct: 28 CATKSAKDSIFGLRDQTCSVSGVESDERPRFVAVTEGDERWLQIALDMIHKNKCDYVALL 87
Query: 79 FYASWCPFSQECRLRFEKLACIFPTIRHLAIEESTVRLRTRYRYGIHGYPTLFLINSTVR 138
FYASWCPFS+ R F+ ++ ++ +I H AI+ES+++ T +YG+HG+PTL L+NST+R
Sbjct: 88 FYASWCPFSRSFRPSFDVISSLYSSIPHFAIKESSIKPSTLSKYGVHGFPTLLLLNSTMR 147
Query: 139 VRYHGPRTVKSLAAFYNDVSGI----NPSMDPAVGDDNIEPKRDCEQEKCLFWSARTPEN 194
RY G R + SL AFY+DV+GI S++ +V ++ + + E E C F AR+PEN
Sbjct: 148 ARYRGTRMLDSLVAFYSDVTGIETLDKTSLERSVSVPHLGNENNTEPENCPFTWARSPEN 207
Query: 195 ILQPDTYLTLAASFVILRLLYLFYPKITAFVKRTWSR----RTLFTCLEQGKHKFNRVYP 250
+L+ +TYL LA FV+LRLL+L YP + F+K TW R L + LE +R
Sbjct: 208 MLRQETYLALAIVFVLLRLLHLIYPTLVVFMKFTWRRIAQNMRLESLLEHTVGFLSRAVQ 267
Query: 251 ---SKQGNLHDGARHATAWASKSLASVSIGE 278
++ NL GA +A AWASKSLA+VSIG+
Sbjct: 268 LCMHRRSNLQGGAMNARAWASKSLATVSIGD 298
>AT4G08930.1 | chr4:5729511-5730724 FORWARD LENGTH=296
Length = 295
Score = 206 bits (524), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 114/252 (45%), Positives = 157/252 (62%), Gaps = 6/252 (2%)
Query: 26 CTRPSAAEAIVGSPEACRSPLRRPLGVTEGDDAILARAVNLL-HANKEDFAAVLFYASWC 84
C R SA + I+G + +S L RP VTEGDD L A +++ NK D+AA+LFYASWC
Sbjct: 29 CPRESAKDYILGFRD--KSALHRPGFVTEGDDRWLQMAADMVDKKNKCDYAALLFYASWC 86
Query: 85 PFSQECRLRFEKLACIFPTIRHLAIEESTVRLRTRYRYGIHGYPTLFLINSTVRVRYHGP 144
PFS+ R F+ ++ ++ ++ H AIEES+V+ T +YG+HG+PT+ L+NST+ V Y G
Sbjct: 87 PFSRLVRPSFDLMSLLYSSVPHFAIEESSVKASTLSKYGVHGFPTIILMNSTMLVVYRGS 146
Query: 145 RTVKSLAAFYNDVSGINPSMDPAVGDDNIEPKRDCEQEKCLF-WSARTPENILQPDTYLT 203
RT+ SL AFY DV+GI + V + + P E E C F W+ R+PEN+L+ +TYLT
Sbjct: 147 RTLDSLVAFYTDVTGIETMDERWVERNRLVPHFHAEPENCPFPWARRSPENLLRQETYLT 206
Query: 204 LAASFVILRLLYLFYPKITAFVKRTWSRRTLFTCLEQGKHKFNRVY--PSKQGNLHDGAR 261
LA FV+LRLL+L P + FVK TW R + +H P NL +GA
Sbjct: 207 LATVFVLLRLLHLISPTMVVFVKFTWGRVSNMRLGNPLEHTVTMYLKEPCMSSNLQEGAM 266
Query: 262 HATAWASKSLAS 273
+A AWASKSLA+
Sbjct: 267 NARAWASKSLAT 278
>AT3G03860.1 | chr3:992465-994315 FORWARD LENGTH=301
Length = 300
Score = 124 bits (312), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 81/260 (31%), Positives = 127/260 (48%), Gaps = 24/260 (9%)
Query: 40 EACRSPLRRPLGVTEGDDAILARAVNLLHANKEDFAAVLFYASWCPFSQECRLRFEKLAC 99
EA P P E D L R + H N + +VLFYASWCPFS+ R +F+ L+
Sbjct: 44 EAKCPPSLYPTPPIEVDGDSLDRLMASQHGNA--YMSVLFYASWCPFSRAVRPKFDMLSS 101
Query: 100 IFPTIRHLAIEESTVRLRTRYRYGIHGYPTLFLINSTVRVRYHGPRTVKSLAAFYNDVSG 159
+FP I+HLA+E S RYGIH P++ ++N T+ RYHG + + SL FY + +G
Sbjct: 102 MFPQIQHLAVEHSQALPSVFSRYGIHSLPSILMVNQTLNARYHGRKDLISLIEFYEEATG 161
Query: 160 INPSMDPAVGDDNIEPKRDCEQEKCLFW--SARTPENILQPDTYLTLAASFVILRLLYLF 217
+ P A G+ + + W + I + D +L L+ F+ L++ L
Sbjct: 162 LQPVQYVAEGEPT---GLNAGDGNLITWLRKGTSIREIFKQDPFLVLSLLFICLQMAILV 218
Query: 218 YPKITAFVKRTWSRRT----------LFTCLEQGKHKFN------RVYPSKQGNLHDGAR 261
+P + ++ W+ + +G H + ++ K N H+ A+
Sbjct: 219 FPIAESRMRALWASYVANLNLGRFGEISQLFNRGIHMVDVRRLWLKLSLVKTRNFHERAK 278
Query: 262 HATAWASKSLASVSIGEPST 281
+A AWAS SLASVS+G+ S+
Sbjct: 279 NAQAWAS-SLASVSLGQTSS 297
>AT5G18120.1 | chr5:5991385-5993696 FORWARD LENGTH=290
Length = 289
Score = 108 bits (270), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 8/179 (4%)
Query: 54 EGDDAILARAVNLLHANKEDFAAVLFYASWCPFSQECRLRFEKLACIFPTIRHLAIEEST 113
E D +L + ++ H N + ++LFY S CPFS+ R +F+ L+ +FP I HL +E+S
Sbjct: 54 EVDGDLLDKLMDANHGNA--YISILFYTSRCPFSRAVRPKFDVLSSMFPHITHLIVEQSQ 111
Query: 114 VRLRTRYRYGIHGYPTLFLINSTVRVRYHGPRTVKSLAAFYNDVSGINPSMDPAVGDDNI 173
RYGIH P++ ++N T+++RYHGP+ + SL FY + +G+ P D
Sbjct: 112 ALPSVFSRYGIHSLPSILMVNQTMKMRYHGPKDLASLIQFYKETTGLK----PVQYMDEG 167
Query: 174 EPKRDCEQEKCLFW--SARTPENILQPDTYLTLAASFVILRLLYLFYPKITAFVKRTWS 230
EP + W + + I + + Y+ LA F+ L+L L +P + + +K W+
Sbjct: 168 EPTSLDTDGNLITWLHNGSSIREIAEREPYMVLALMFLSLKLAILIFPIMGSRLKTLWA 226
>AT2G47470.1 | chr2:19481503-19483683 FORWARD LENGTH=362
Length = 361
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 68 HANKEDFAAVLFYASWCPFSQECRLRFEKLACIFPTIRHLAIEESTVRLRTRY--RYGIH 125
K+ A V FYA WC ++ +EKL F + + I + + +YG+
Sbjct: 36 EVGKDKGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIAKVDCDEQKSVCTKYGVS 95
Query: 126 GYPTL--FLINSTVRVRYHGPRTVKSLAAFYNDVSGINPSM 164
GYPT+ F S +Y GPR ++LA + N G N +
Sbjct: 96 GYPTIQWFPKGSLEPQKYEGPRNAEALAEYVNKEGGTNVKL 136
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.136 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,933,813
Number of extensions: 238179
Number of successful extensions: 594
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 590
Number of HSP's successfully gapped: 5
Length of query: 282
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 185
Effective length of database: 8,447,217
Effective search space: 1562735145
Effective search space used: 1562735145
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 111 (47.4 bits)