BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0218900 Os06g0218900|Os06g0218900
         (715 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0218900  LMBR1-like conserved region domain containing ...  1340   0.0  
Os02g0758100  LMBR1-like conserved region domain containing ...   947   0.0  

>Os06g0218900 LMBR1-like conserved region domain containing protein
          Length = 715

 Score = 1340 bits (3468), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 652/715 (91%), Positives = 652/715 (91%)

Query: 1   MWAFYLLSLPLTVGMVVATLRYFAGPAVPLHVLATVGYAWLCSLSFIVLVPADISTTITG 60
           MWAFYLLSLPLTVGMVVATLRYFAGPAVPLHVLATVGYAWLCSLSFIVLVPADISTTITG
Sbjct: 1   MWAFYLLSLPLTVGMVVATLRYFAGPAVPLHVLATVGYAWLCSLSFIVLVPADISTTITG 60

Query: 61  SQEGDVGXXXXXXXXXXXXXXXXIVPTLQGYEDAGDFTVKERLKTSIHKNLVYYKXXXXX 120
           SQEGDVG                IVPTLQGYEDAGDFTVKERLKTSIHKNLVYYK     
Sbjct: 61  SQEGDVGFFWSWTYWSTFFLSWSIVPTLQGYEDAGDFTVKERLKTSIHKNLVYYKIIGSI 120

Query: 121 XXXXXXXXXTMRHDWAGGIMGFAMACSNTFGLVTGAFLLGFGLSEIPKNIWKTADWTRRQ 180
                    TMRHDWAGGIMGFAMACSNTFGLVTGAFLLGFGLSEIPKNIWKTADWTRRQ
Sbjct: 121 GLVGVILIITMRHDWAGGIMGFAMACSNTFGLVTGAFLLGFGLSEIPKNIWKTADWTRRQ 180

Query: 181 KFLYHRIANMAGKFDNAHQEYCHAIAVVQATSKQMTKREPLRPFMDIIDDMLAQMLRDDP 240
           KFLYHRIANMAGKFDNAHQEYCHAIAVVQATSKQMTKREPLRPFMDIIDDMLAQMLRDDP
Sbjct: 181 KFLYHRIANMAGKFDNAHQEYCHAIAVVQATSKQMTKREPLRPFMDIIDDMLAQMLRDDP 240

Query: 241 LFKPSGGKLGEDDMDYDTDENTMASLRRQLRRANEEYYRCKSKYTSYVMEALELEDTIKN 300
           LFKPSGGKLGEDDMDYDTDENTMASLRRQLRRANEEYYRCKSKYTSYVMEALELEDTIKN
Sbjct: 241 LFKPSGGKLGEDDMDYDTDENTMASLRRQLRRANEEYYRCKSKYTSYVMEALELEDTIKN 300

Query: 301 YEQRDANEWKYVSGLRESRSCTLGSFLDFIEFIWRCILKKQLLKVLAVILGCISAAILLA 360
           YEQRDANEWKYVSGLRESRSCTLGSFLDFIEFIWRCILKKQLLKVLAVILGCISAAILLA
Sbjct: 301 YEQRDANEWKYVSGLRESRSCTLGSFLDFIEFIWRCILKKQLLKVLAVILGCISAAILLA 360

Query: 361 EATLLPSDVDLSLFSVLTNXXXXXXXXXXXXAFIPLMYMCICTYYSLFRIGMMVVYSLTP 420
           EATLLPSDVDLSLFSVLTN            AFIPLMYMCICTYYSLFRIGMMVVYSLTP
Sbjct: 361 EATLLPSDVDLSLFSVLTNVVGKQEVLVQVVAFIPLMYMCICTYYSLFRIGMMVVYSLTP 420

Query: 421 RQTSSVSLLMICSMVARYAAPISYNFLNLIHLGGNSKTTFEKRMGNIDDVVPFFGRSFNR 480
           RQTSSVSLLMICSMVARYAAPISYNFLNLIHLGGNSKTTFEKRMGNIDDVVPFFGRSFNR
Sbjct: 421 RQTSSVSLLMICSMVARYAAPISYNFLNLIHLGGNSKTTFEKRMGNIDDVVPFFGRSFNR 480

Query: 481 IYPLIMVVYTLLVAGNFFGYVLEFFGSWKRFRFWTEQEEDHTDGFDPSGVLILQKERCWI 540
           IYPLIMVVYTLLVAGNFFGYVLEFFGSWKRFRFWTEQEEDHTDGFDPSGVLILQKERCWI
Sbjct: 481 IYPLIMVVYTLLVAGNFFGYVLEFFGSWKRFRFWTEQEEDHTDGFDPSGVLILQKERCWI 540

Query: 541 EQGHKVGELVAPLARNFTGIYKDVESGNVQQDEETAGMKATTLPSKKEGRLQSKYASNVA 600
           EQGHKVGELVAPLARNFTGIYKDVESGNVQQDEETAGMKATTLPSKKEGRLQSKYASNVA
Sbjct: 541 EQGHKVGELVAPLARNFTGIYKDVESGNVQQDEETAGMKATTLPSKKEGRLQSKYASNVA 600

Query: 601 LKYSSIREQNSSHQAVKQAQTETQSTSVVPETGNSETPSSVSKEPDSSAGIASRWTLMKT 660
           LKYSSIREQNSSHQAVKQAQTETQSTSVVPETGNSETPSSVSKEPDSSAGIASRWTLMKT
Sbjct: 601 LKYSSIREQNSSHQAVKQAQTETQSTSVVPETGNSETPSSVSKEPDSSAGIASRWTLMKT 660

Query: 661 GFQNFKANMXXXXXXXXXXXXXXXXXXXXXDEIFEGLKRHSSNASVDYLDDDDGI 715
           GFQNFKANM                     DEIFEGLKRHSSNASVDYLDDDDGI
Sbjct: 661 GFQNFKANMSSKKFLPLSLSSTQSSSSGSLDEIFEGLKRHSSNASVDYLDDDDGI 715



>Os02g0758100 LMBR1-like conserved region domain containing protein
          Length = 734

 Score =  947 bits (2449), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/719 (65%), Positives = 541/719 (75%), Gaps = 14/719 (1%)

Query: 1   MWAFYLLSLPLTVGMVVATLRYFAGPAVPLHVLATVGYAWLCSLSFIVLVPADISTTITG 60
           MW FYL+SLPLT+GMV  TLRYFAGP VP +V+ATVGYAW CSLSFI+LVPADI TT+TG
Sbjct: 1   MWVFYLISLPLTLGMVTVTLRYFAGPGVPRYVIATVGYAWFCSLSFIILVPADIWTTLTG 60

Query: 61  SQEGDVGXXXXXXXXXXXXXXXXIVPTLQGYEDAGDFTVKERLKTSIHKNLVYYKXXXXX 120
            ++G +G                +VPT+QGYEDAGDFTVKERLKTSIH NL++Y      
Sbjct: 61  REKGGIGFFWSWSYWSTFILTWAVVPTIQGYEDAGDFTVKERLKTSIHMNLLFYSIVGAI 120

Query: 121 XXXXXXXXXTMRHDWAGGIMGFAMACSNTFGLVTGAFLLGFGLSEIPKNIWKTADWTRRQ 180
                     M   W GGI+GFAMACSNTFGLVTGAFLLGFGLSEIP+NIWK ADWT RQ
Sbjct: 121 GLFGLILLLVMHRAWDGGIVGFAMACSNTFGLVTGAFLLGFGLSEIPRNIWKNADWTHRQ 180

Query: 181 KFLYHRIANMAGKFDNAHQEYCHAIAVVQATSKQMTKREPLRPFMDIIDDMLAQMLRDDP 240
           K L HR+A MA K DNAHQEY +AI V QATS QM+KR+ LRP+MDIID MLAQMLR+DP
Sbjct: 181 KVLSHRVAKMAVKLDNAHQEYSNAIVVAQATSNQMSKRDLLRPYMDIIDKMLAQMLREDP 240

Query: 241 LFKPSGGKLGEDDMDYDTDENTMASLRRQLRRANEEYYRCKSKYTSYVMEALELEDTIKN 300
            FKPSGG+LGE+DMDYDTD+ TMA+LRRQLRRA+EEYYRCKS+Y +YVMEALELEDTIKN
Sbjct: 241 SFKPSGGRLGENDMDYDTDDKTMATLRRQLRRAHEEYYRCKSEYMTYVMEALELEDTIKN 300

Query: 301 YEQRDANEWKYVSGLRESRSCTLGSFLDFIEFIWRCILKKQLLKVLAVILGCISAAILLA 360
           YE+RDAN WK+VS  RESR  TLGS LD +EFIWRC+L+KQL K  A++LGC+SAAILLA
Sbjct: 301 YERRDANGWKFVSSFRESRPGTLGSLLDTMEFIWRCVLRKQLQKGFAIVLGCMSAAILLA 360

Query: 361 EATLLPSDVDLSLFSVLTNXXXXXXXXXXXXAFIPLMYMCICTYYSLFRIGMMVVYSLTP 420
           EATLLPS VDLSLFS+L              AF+PLMYMCICTYYSLF+IGM++ YSLTP
Sbjct: 361 EATLLPSGVDLSLFSILVKSVGKQEVLVQVAAFVPLMYMCICTYYSLFQIGMLMFYSLTP 420

Query: 421 RQTSSVSLLMICSMVARYAAPISYNFLNLIHLGGNSKTTFEKRMGNIDDVVPFFGRSFNR 480
           RQTSSVSLLMICSMVARYA PISYNFLNLI LGG++KTTFEKRMGNIDD VPFFGR FNR
Sbjct: 421 RQTSSVSLLMICSMVARYAPPISYNFLNLIRLGGDAKTTFEKRMGNIDDAVPFFGRGFNR 480

Query: 481 IYPLIMVVYTLLVAGNFFGYVLEFFGSWKRFRFWTEQEEDHTDGFDPSGVLILQKERCWI 540
           IYPL MVVYTLLVA NFFG ++ FFGSWKRF+F  ++EE++ DGFDPSG++ILQKER WI
Sbjct: 481 IYPLFMVVYTLLVASNFFGRLINFFGSWKRFKF--QREEENMDGFDPSGMIILQKERSWI 538

Query: 541 EQGHKVGELVAPLARNFTGIYKDVESGNVQQDEETAGMKATTLPSKKEGRL-QSKYASN- 598
           EQG KVGE V PLARNF  +  DVESG V   E T  MK+    S+ +GR+ QSKYA+N 
Sbjct: 539 EQGCKVGEQVIPLARNFNNVNTDVESGKVPLVENTLEMKSGATSSRADGRVGQSKYANNR 598

Query: 599 --VALKYSSIREQNSSHQAVKQAQTETQSTSV-VPETGNSETPSSVSKEPDSSAGIASRW 655
             +A KYS+IREQ  S QAVK A+ E  STSV + E G+SE  S+      SSAGI+  W
Sbjct: 599 ETIATKYSAIREQ--SRQAVKPAKKEISSTSVSLLEEGSSEQWSNTGAPVGSSAGISQTW 656

Query: 656 TLMKTGFQNFKANMXXXXXXXXX-----XXXXXXXXXXXXDEIFEGLKRHSSNASVDYL 709
             MK GFQNFKANM                          DEIF+ LKR  ++  VDYL
Sbjct: 657 ATMKIGFQNFKANMGSKKFIPLRQDPGFAPHSNVSSPESLDEIFQKLKRRPADMPVDYL 715



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,636,032
Number of extensions: 829106
Number of successful extensions: 2196
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2188
Number of HSP's successfully gapped: 2
Length of query: 715
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 607
Effective length of database: 11,396,689
Effective search space: 6917790223
Effective search space used: 6917790223
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 160 (66.2 bits)