Os02g0758100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : LMBR1-like conserved region domain containing protein.
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Os02g0758100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : LMBR1-like conserved region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.53 | 0.264 | 8.07 | -0.298 | 0.647 | -0.203 | -0.224 | 1.63 | 0.155 | 6.69 | 19.98 | 327 | -- | -- |
| 37.32 | 0.285 | 8.08 | -0.259 | 0.597 | -0.227 | 0.0543 | -- | 0.141 | 6.91 | 19.98 | 1785 | -- | -- |
| 31.65 | 0.262 | 8.07 | -0.298 | 0.646 | -0.204 | -- | 1.58 | 0.155 | 6.71 | 19.97 | 326 | -- | -- |
| 36.28 | 0.281 | 8.07 | -0.302 | 0.636 | -0.27 | -- | -- | 0.156 | 7.37 | 29.98 | 1729 | -- | -- |
| 46.79 | 0.319 | 8.09 | -0.443 | -- | 0.45 | -- | 1.2 | 0.154 | -- | 10 | 756 | -- | -- |
| 38.85 | 0.292 | 8.07 | -0.283 | 0.591 | -- | -0.151 | -- | 0.183 | 7.55 | -- | -- | -- | -- |
| 38.91 | 0.292 | 8.07 | -0.287 | 0.592 | -- | -- | -- | 0.183 | 7.47 | -- | -- | -- | -- |
| 42.39 | 0.303 | 8.09 | -0.25 | -- | 0.663 | -- | -- | 0.165 | -- | 0.6511 | 880 | -- | -- |
| 38.57 | 0.289 | 8.07 | -- | 0.633 | -0.268 | -- | -- | 0.157 | 7.34 | 29.98 | 1729 | -- | -- |
| 57.6 | 0.355 | 8.08 | -0.278 | -- | -- | -- | -- | 0.193 | -- | -- | -- | -- | -- |
| 41.08 | 0.3 | 8.06 | -- | 0.589 | -- | -- | -- | 0.215 | 7.5 | -- | -- | -- | -- |
| 42.76 | 0.305 | 8.08 | -- | -- | 0.805 | -- | -- | 0.239 | -- | 0.16 | 897 | -- | -- |
| 59.64 | 0.36 | 8.08 | -- | -- | -- | -- | -- | 0.224 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.45 | humidity | 90 | 720 | < th | dose independent | rect. | 1 | 16 |
| 3 | 30.58 | humidity | 90 | 720 | < th | dose independent | rect. | 3 | 14 |
| 5 | 30.61 | humidity | 90 | 720 | < th | dose independent | sin | 2 | NA |
| 32 | 31.39 | humidity | 90 | 720 | < th | dose independent | rect. | 8 | 8 |
| 33 | 31.40 | radiation | 20 | 270 | < th | dose independent | rect. | 5 | 22 |
| 41 | 31.50 | radiation | 1 | 720 | > th | dose dependent | sin | 6 | NA |
| 50 | 31.56 | radiation | 1 | 720 | > th | dose dependent | rect. | 5 | 8 |
| 80 | 31.67 | radiation | 20 | 270 | < th | dose independent | rect. | 15 | 22 |
| 85 | 31.70 | radiation | 20 | 720 | < th | dose independent | rect. | 15 | 20 |
| 94 | 31.75 | radiation | 20 | 270 | < th | dose independent | rect. | 2 | 23 |
| 103 | 31.82 | radiation | 20 | 720 | < th | dose dependent | rect. | 16 | 21 |
| 110 | 31.86 | radiation | 20 | 720 | < th | dose independent | sin | 11 | NA |
| 158 | 31.95 | radiation | 10 | 720 | < th | dose dependent | rect. | 19 | 19 |
| 159 | 31.96 | humidity | 70 | 90 | > th | dose independent | rect. | 16 | 21 |
| 172 | 31.98 | radiation | 20 | 720 | < th | dose dependent | rect. | 5 | 22 |
| 177 | 31.99 | radiation | 20 | 270 | < th | dose independent | rect. | 19 | 23 |
| 192 | 32.04 | humidity | 70 | 270 | > th | dose dependent | rect. | 16 | 21 |
| 198 | 32.05 | humidity | 50 | 90 | > th | dose dependent | rect. | 16 | 21 |
| 218 | 32.08 | humidity | 50 | 90 | > th | dose dependent | rect. | 16 | 23 |
| 228 | 32.09 | radiation | 10 | 720 | < th | dose dependent | rect. | 19 | 22 |
| 232 | 32.11 | radiation | 20 | 270 | < th | dose independent | no | NA | NA |
| 297 | 32.17 | humidity | 70 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 311 | 32.19 | humidity | 60 | 90 | > th | dose dependent | rect. | 5 | 22 |
| 338 | 32.22 | radiation | 20 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 365 | 32.23 | radiation | 1 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 375 | 32.25 | temperature | 15 | 720 | > th | dose independent | rect. | 9 | 6 |
| 383 | 32.26 | temperature | 15 | 1440 | > th | dose independent | rect. | 9 | 12 |
| 398 | 32.28 | humidity | 80 | 270 | > th | dose independent | rect. | 1 | 23 |
| 415 | 32.29 | radiation | 20 | 270 | > th | dose dependent | rect. | 10 | 3 |
| 416 | 32.29 | humidity | 90 | 720 | < th | dose dependent | rect. | 24 | 14 |
| 445 | 32.32 | radiation | 20 | 720 | < th | dose dependent | no | NA | NA |
| 446 | 32.32 | radiation | 30 | 720 | < th | dose dependent | rect. | 5 | 18 |
| 531 | 32.38 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 1 |
| 535 | 32.38 | radiation | 10 | 720 | < th | dose dependent | rect. | 5 | 15 |
| 543 | 32.39 | temperature | 15 | 1440 | > th | dose independent | sin | 21 | NA |
| 570 | 32.41 | radiation | 20 | 270 | < th | dose independent | rect. | 19 | 18 |
| 611 | 32.43 | humidity | 80 | 270 | > th | dose independent | sin | 7 | NA |
| 671 | 32.46 | temperature | 15 | 90 | > th | dose independent | sin | 15 | NA |
| 672 | 32.46 | temperature | 15 | 270 | > th | dose independent | sin | 21 | NA |
| 680 | 32.46 | radiation | 1 | 270 | > th | dose dependent | sin | 23 | NA |
| 687 | 32.47 | humidity | 80 | 270 | > th | dose independent | no | NA | NA |
| 693 | 32.47 | humidity | 70 | 270 | > th | dose dependent | no | NA | NA |
| 697 | 32.47 | radiation | 1 | 270 | > th | dose dependent | rect. | 9 | 10 |
| 719 | 32.48 | temperature | 15 | 720 | > th | dose independent | rect. | 5 | 16 |
| 723 | 32.48 | humidity | 90 | 720 | < th | dose dependent | sin | 6 | NA |
| 725 | 32.48 | radiation | 30 | 720 | < th | dose dependent | sin | 11 | NA |
| 733 | 32.49 | temperature | 15 | 90 | > th | dose independent | sin | 19 | NA |
| 734 | 32.49 | temperature | 15 | 90 | > th | dose independent | sin | 6 | NA |
| 765 | 32.51 | temperature | 15 | 270 | > th | dose independent | sin | 4 | NA |
| 792 | 32.51 | radiation | 1 | 270 | > th | dose dependent | rect. | 7 | 23 |
| 803 | 32.52 | radiation | 1 | 270 | > th | dose dependent | no | NA | NA |
| 805 | 32.52 | radiation | 1 | 270 | > th | dose dependent | rect. | 4 | 15 |
| 897 | 32.54 | temperature | 15 | 270 | > th | dose independent | sin | 17 | NA |
| 901 | 32.54 | radiation | 20 | 270 | < th | dose independent | rect. | 9 | 15 |
| 932 | 32.55 | humidity | 80 | 270 | > th | dose independent | rect. | 4 | 23 |