Os06g0218900 - FiT-DB

FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0218900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : LMBR1-like conserved region domain containing protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	5.26	(0.0637)	R²	:	0.598
β₁	:	--	(--)	R²_dD	:	--	R²_D	:	--
β₂	:	3.13	(0.154)	R²_dC	:	0.37	R²_C	:	0.406
β₃	:	2.67	(0.197)	R²_dE	:	0.18	R²_E	:	0.147
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	1.06	(0.14)	R²_dN8	:	0.0756	R²_N8	:	0.00201
σ	:	1.18
deviance	:	644.59
__

_____

C
peak time of C	:	2.06
E
wheather	:	radiation
threshold	:	16.74
memory length	:	1255
response mode	:	< th
dose dependency	:	dose independent
G
type of G	:	rect.
peak or start time of G	:	10.8
open length of G	:	2.53

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
619.68	1.17	5.26	-0.56	3.19	2.5	-1.6	-1.71	1.02	2.04	16.18	1291	10.8	2.45
623.48	1.16	5.26	-0.572	3.18	2.65	-1.64	--	1.07	2.11	16.76	1250	10.8	2.52
628.63	1.17	5.26	-0.523	3.15	2.55	--	-1.62	1.09	2.05	16.76	1270	10.8	2.48
635.83	1.17	5.26	-0.569	3.14	2.62	--	--	1.05	2.05	16.74	1255	10.8	2.53
829.23	1.34	5.03	-1.82	--	4.38	--	-2.35	1.33	--	9.966	923	14.7	4.85
855.4	1.37	5.43	-1.11	3.36	--	-1.93	--	0.362	1.8	--	--	--	--
869.86	1.38	5.42	-1.05	3.36	--	--	--	0.374	1.74	--	--	--	--
725.3	1.25	5.4	-1.19	--	4.26	--	--	0.474	--	9.03	838	14.5	6.22
644.59	1.18	5.26	--	3.13	2.67	--	--	1.06	2.06	16.74	1255	10.8	2.53
1555.91	1.84	5.39	-0.912	--	--	--	--	0.45	--	--	--	--	--
898.86	1.4	5.4	--	3.34	--	--	--	0.491	1.73	--	--	--	--
742.9	1.27	5.34	--	--	4.33	--	--	0.691	--	10.81	841	13.8	7.15
1577.86	1.85	5.36	--	--	--	--	--	0.551	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	649.51	radiation	20	1440	< th	dose independent	rect.	11	2
3	662.43	radiation	20	1440	< th	dose dependent	rect.	8	7
4	662.80	radiation	20	1440	< th	dose independent	rect.	11	5
11	665.66	radiation	20	1440	< th	dose independent	rect.	11	22
15	666.39	radiation	20	1440	< th	dose dependent	rect.	2	14
18	666.49	radiation	20	1440	< th	dose dependent	rect.	21	19
19	666.50	radiation	20	1440	< th	dose dependent	sin	0	NA
25	666.74	radiation	20	1440	< th	dose independent	rect.	8	6
29	667.05	radiation	30	1440	< th	dose dependent	rect.	11	2
36	667.77	radiation	20	1440	< th	dose independent	rect.	17	21
37	667.88	radiation	20	1440	< th	dose independent	rect.	4	10
38	667.91	radiation	20	1440	< th	dose independent	rect.	2	12
45	668.03	radiation	20	1440	< th	dose independent	rect.	21	17
77	669.27	radiation	20	1440	< th	dose independent	rect.	17	23
80	669.30	radiation	20	1440	< th	dose independent	rect.	11	13
97	669.54	radiation	20	1440	< th	dose independent	rect.	11	16
98	669.56	radiation	20	1440	< th	dose independent	sin	0	NA
110	669.83	radiation	20	1440	< th	dose dependent	rect.	7	17
113	669.89	radiation	20	1440	< th	dose independent	rect.	15	23
124	670.05	radiation	20	1440	< th	dose dependent	rect.	7	20
136	670.21	radiation	20	1440	< th	dose dependent	rect.	8	23
185	671.14	radiation	20	1440	< th	dose independent	rect.	8	23
187	671.34	radiation	20	1440	< th	dose independent	rect.	8	16
194	671.46	radiation	20	1440	< th	dose dependent	rect.	11	23
200	671.52	radiation	20	1440	< th	dose independent	rect.	8	19
228	672.07	radiation	20	1440	< th	dose independent	rect.	4	20
230	672.09	radiation	20	1440	< th	dose independent	rect.	2	22
282	672.24	radiation	20	1440	< th	dose independent	rect.	4	23
308	672.31	radiation	20	1440	< th	dose independent	no	NA	NA
319	672.33	radiation	20	1440	< th	dose dependent	rect.	2	22
388	672.59	radiation	20	1440	< th	dose dependent	no	NA	NA
428	673.51	radiation	20	1440	> th	dose independent	rect.	11	2
582	676.09	radiation	10	1440	> th	dose independent	rect.	6	9
679	676.85	radiation	20	1440	> th	dose independent	rect.	8	6
808	680.33	radiation	1	1440	> th	dose dependent	rect.	11	2
846	680.84	radiation	10	1440	> th	dose independent	sin	3	NA
943	682.21	radiation	1	1440	> th	dose dependent	rect.	11	4
992	682.64	radiation	20	1440	> th	dose independent	rect.	11	23