BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0218900 Os06g0218900|Os06g0218900
         (715 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G65290.1  | chr5:26089814-26094337 FORWARD LENGTH=734          773   0.0  

>AT5G65290.1 | chr5:26089814-26094337 FORWARD LENGTH=734
          Length = 733

 Score =  773 bits (1995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/741 (54%), Positives = 501/741 (67%), Gaps = 34/741 (4%)

Query: 1   MWAFYLLSLPLTVGMVVATLRYFAGPAVPLHVLATVGYAWLCSLSFIVLVPADISTTIT- 59
           MW FYL+SLPLT+G+VV TLRYFAGP +P +VL TVGY W CS+S I+L PADI TT++ 
Sbjct: 1   MWVFYLISLPLTLGLVVFTLRYFAGPEIPRYVLITVGYTWFCSVSVIILAPADIWTTLSL 60

Query: 60  ---GSQEGDVGXXXXXXXXXXXXXXXXIVPTLQGYEDAGDFTVKERLKTSIHKNLVYYKX 116
                + G +                 +VP +QG+EDAGDFTV ERLKTS+H NLV+Y  
Sbjct: 61  QPDHPENGAISFLWSWSYWSTFLLTWAVVPLIQGFEDAGDFTVSERLKTSVHVNLVFYLV 120

Query: 117 XXXXXXXXXXXXXTMRHDWAGGIMGFAMACSNTFGLVTGAFLLGFGLSEIPKNIWKTADW 176
                         M  +W G I+G+AMACSNTFGLVTGAFLLGFGLSEIPK +WK ADW
Sbjct: 121 LGFIGLLGLILLIMMHRNWTGSILGYAMACSNTFGLVTGAFLLGFGLSEIPKTLWKNADW 180

Query: 177 TRRQKFLYHRIANMAGKFDNAHQEYCHAIAVVQATSKQMTKREPLRPFMDIIDDMLAQML 236
           T RQK L H+IA +A K DNAHQE  +AI V QATS QM+KR+P+RP+M++ID MLA+M 
Sbjct: 181 TTRQKVLSHKIAKIAVKLDNAHQELSNAIVVAQATSTQMSKRDPMRPYMNVIDAMLAKMF 240

Query: 237 RDDPLFKPSGGKLGEDDMDYDTDENTMASLRRQLRRANEEYYRCKSKYTSYVMEALELED 296
           R+DP FKP GG+LGE+DMDYDTDE +MA+LRR LR A +EYYR KS+Y +YV EAL LED
Sbjct: 241 REDPSFKPQGGQLGENDMDYDTDEKSMATLRRHLRNAKDEYYRYKSEYLTYVTEALVLED 300

Query: 297 TIKNYEQRDANEWKYVSGLRESRSCTLGSFLDFIEFIWRCILKKQLLKVLAVILGCISAA 356
           T+KNYE+RDA  WKY+S  R +R+  +G+ LD +EF+WRCILKKQ+  VLAV++G +SAA
Sbjct: 301 TMKNYERRDATGWKYISSFRATRTGKMGNLLDSLEFMWRCILKKQIQMVLAVVMGIMSAA 360

Query: 357 ILLAEATLLPSDVDLSLFSVLTNXXXXXXXXXXXXAFIPLMYMCICTYYSLFRIGMMVVY 416
           ILLAEATLL S +DLSLFS+L +            AF+PL+YMC+CTYYSLF+IGM+++Y
Sbjct: 361 ILLAEATLLLSKLDLSLFSILISSVKSDELLVQAFAFVPLVYMCVCTYYSLFKIGMLMIY 420

Query: 417 SLTPRQTSSVSLLMICSMVARYAAPISYNFLNLIHLGGNSKTTFEKRMGNIDDVVPFFGR 476
           SLTPRQTSSV+LLMICSM+ARYA PISYNF+NLI L  +S+T FEK+MG IDD VP FG+
Sbjct: 421 SLTPRQTSSVNLLMICSMIARYAPPISYNFINLIQL--HSETIFEKKMGRIDDAVPVFGQ 478

Query: 477 SFNRIYPLIMVVYTLLVAGNFFGYVLEFFGSWKRFRFWTEQEEDHTDGFDPSGVLILQKE 536
            FN IYPLIMV+YTLLVA NFF  +  +FGSWKRFRF TE E+  TDGFDPSG++IL+KE
Sbjct: 479 RFNEIYPLIMVIYTLLVASNFFDRIFNYFGSWKRFRFQTETED--TDGFDPSGLMILKKE 536

Query: 537 RCWIEQGHKVGELVAPLARNFTGIYKDVESGNVQQDEETAGMKA-------TTLPSKKEG 589
           R W+E+G KVGE V PLARNF  +  D+E G+   +  +  MK        T   S  + 
Sbjct: 537 RTWLEEGQKVGEHVLPLARNFNDV--DIEPGSNFSENSSVEMKMSSSYDIDTLKGSSSKD 594

Query: 590 RLQSKYAS---NVALKYSSIREQNSSHQAVKQAQTETQSTSVVP--ETGNSETPSSVSKE 644
            +  KY S    +  KY++IREQ + H      + E  +++ V   ET NS  PS+    
Sbjct: 595 DMSRKYGSAREAITNKYAAIREQQNKHSPSSMTKPENMASAKVSLLETDNS-GPSNGQGS 653

Query: 645 PDSSAGIASRWTLMKTGFQNFKANMXXX----------XXXXXXXXXXXXXXXXXXDEIF 694
            + S+ +AS W  MK G Q+FK N+                               DEIF
Sbjct: 654 GEPSSRLASTWRNMKLGIQSFKENVATKKFLPLRQSPETTALTSTRVVTSSVPQSLDEIF 713

Query: 695 EGLKRHSSNASVDYLDDDDGI 715
           + LK  S   S  YLDDDD +
Sbjct: 714 QRLKNRSVEHS-PYLDDDDEV 733



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 14,197,790
Number of extensions: 562496
Number of successful extensions: 1666
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1660
Number of HSP's successfully gapped: 1
Length of query: 715
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 609
Effective length of database: 8,200,473
Effective search space: 4994088057
Effective search space used: 4994088057
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 115 (48.9 bits)