BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0207700 Os06g0207700|J065166C13
         (207 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0207700  Conserved hypothetical protein                      432   e-121
Os02g0773400  Ion transport domain containing protein             244   3e-65

>Os06g0207700 Conserved hypothetical protein
          Length = 207

 Score =  432 bits (1110), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 207/207 (100%), Positives = 207/207 (100%)

Query: 1   MSGQERDDVPMLELQRFPTRSVSMCIPVRDDIYEDSIISHSGPIFTPAPTQYTSVAIPSG 60
           MSGQERDDVPMLELQRFPTRSVSMCIPVRDDIYEDSIISHSGPIFTPAPTQYTSVAIPSG
Sbjct: 1   MSGQERDDVPMLELQRFPTRSVSMCIPVRDDIYEDSIISHSGPIFTPAPTQYTSVAIPSG 60

Query: 61  NRDMLDKLPRPKVKSKPHVVTPEEVGISNWPYDQHVPKNKHLMMYSEPLGLCDNPDCVDC 120
           NRDMLDKLPRPKVKSKPHVVTPEEVGISNWPYDQHVPKNKHLMMYSEPLGLCDNPDCVDC
Sbjct: 61  NRDMLDKLPRPKVKSKPHVVTPEEVGISNWPYDQHVPKNKHLMMYSEPLGLCDNPDCVDC 120

Query: 121 PRACKNKRHFQRSLAPFDNKFHNILYGYGDRWKKKAGHYLSYIPIMKPHDKAVHRWNQFF 180
           PRACKNKRHFQRSLAPFDNKFHNILYGYGDRWKKKAGHYLSYIPIMKPHDKAVHRWNQFF
Sbjct: 121 PRACKNKRHFQRSLAPFDNKFHNILYGYGDRWKKKAGHYLSYIPIMKPHDKAVHRWNQFF 180

Query: 181 VISCLLAIFNDPLFFFLLSVDKVRLQV 207
           VISCLLAIFNDPLFFFLLSVDKVRLQV
Sbjct: 181 VISCLLAIFNDPLFFFLLSVDKVRLQV 207



>Os02g0773400 Ion transport domain containing protein
          Length = 772

 Score =  244 bits (623), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 123/208 (59%), Positives = 147/208 (70%), Gaps = 7/208 (3%)

Query: 1   MSGQERDDVPML----ELQRFPTRSVSMCIPVRDDIYE-DSIISHSGPIFTPAPTQYTSV 55
           MS QERDD+PML    EL  FP RS SMCIPVRDD YE D+ + H+GP+F   PTQ  + 
Sbjct: 1   MSDQERDDIPMLLRNVELPTFPPRSTSMCIPVRDDEYEEDTFVPHTGPLFVQPPTQTAAA 60

Query: 56  AIPSGNR-DMLDKLPRPKVKSKPHVVTPEEVGISNWPYDQHVPKNKHLMMYSEPLGLCDN 114
            IP  N  DM  + P+ K  +KPH + PEE+G + W Y  +VPKN+HLMM S PLG CD+
Sbjct: 61  GIPFTNTPDMPPRPPQGKQVNKPHAIMPEEIGGNRWSYSGNVPKNEHLMM-SGPLGQCDD 119

Query: 115 PDCVDCPRACKNKRHFQRSLAPFDNKFHNILYGYGDRWKKKAGHYLSYIPIMKPHDKAVH 174
           PDCV+CP ACKNKRHF R  +  D+KFHN L  +G  WKK+   +LS IP+M PH K V 
Sbjct: 120 PDCVNCPPACKNKRHFHRGSSTLDSKFHNFLCEHGGGWKKEIERFLSRIPVMNPHAKVVQ 179

Query: 175 RWNQFFVISCLLAIFNDPLFFFLLSVDK 202
           +WNQFFVISCL+AIF DPLFFFLLSV K
Sbjct: 180 QWNQFFVISCLVAIFIDPLFFFLLSVQK 207



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.140    0.456 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,271,938
Number of extensions: 394548
Number of successful extensions: 643
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 639
Number of HSP's successfully gapped: 2
Length of query: 207
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 111
Effective length of database: 12,023,257
Effective search space: 1334581527
Effective search space used: 1334581527
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 153 (63.5 bits)