BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0202100 Os06g0202100|AK106373
         (281 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0202100  Conserved hypothetical protein                      256   1e-68
Os06g0201800                                                      148   4e-36
Os06g0201000  Conserved hypothetical protein                       79   4e-15
Os06g0201300                                                       67   1e-11

>Os06g0202100 Conserved hypothetical protein
          Length = 281

 Score =  256 bits (654), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 151/281 (53%), Positives = 151/281 (53%)

Query: 1   MSRVIRNIIVVAMGAGALGGPDALRLLLAFAGKSPLVDILIAVFVIAAVTAPALGTMLLA 60
           MSRVIRNIIVVAMGAGALGGPDALRLLLAFAGKSPLVDILIAVFVIAAVTAPALGTMLLA
Sbjct: 1   MSRVIRNIIVVAMGAGALGGPDALRLLLAFAGKSPLVDILIAVFVIAAVTAPALGTMLLA 60

Query: 61  RFFRKXXXXXXXXXXXXXXXXXXXXDDPFAQMTXXXXXXXXXXXXXXXXXXPLFQSGHXX 120
           RFFRK                    DDPFAQMT                  PLFQSGH  
Sbjct: 61  RFFRKPRAVPGAARAGRGAAGAAVADDPFAQMTLVVSLAVAFLVSASLLVLPLFQSGHLV 120

Query: 121 XXXXXXXXXXXXXCASRVRGVLLPNXXXXXXXXXXXXXXXXERGIKPTLSVSLAAICLVL 180
                        CASRVRGVLLPN                ERGIKPTLSVSLAAICLVL
Sbjct: 121 PLAFAGVALVVGACASRVRGVLLPNAHGGAGAGATPAATATERGIKPTLSVSLAAICLVL 180

Query: 181 VAPWRLAVGILDAPSQRXXXXXXXXXXXXXXXXXXXXXXXXXXRFRKAKHXXXXXXXXXX 240
           VAPWRLAVGILDAPSQR                          RFRKAKH          
Sbjct: 181 VAPWRLAVGILDAPSQRLLAPLATVPVVGVAAATVVGTTILVLRFRKAKHAAATPDAATT 240

Query: 241 XXXERSHKMXXXXXXXXXXXXXXXXXXXXXXCPRRVFGCAC 281
              ERSHKM                      CPRRVFGCAC
Sbjct: 241 PATERSHKMVMVTALAVAFFLAVPLVVVVDACPRRVFGCAC 281



>Os06g0201800 
          Length = 254

 Score =  148 bits (374), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 99/197 (50%), Positives = 111/197 (56%), Gaps = 18/197 (9%)

Query: 1   MSRVIRNIIVVAMGAGALGGPDALRLLLAFAGKSPLVDILIAVFVIAAVTAPALGTMLLA 60
           M+ ++RN IVVAMGAGALGGPDALRLLL FAG+SPLVDIL+ VFVIAAVTAPALGT+LLA
Sbjct: 1   MAAILRNTIVVAMGAGALGGPDALRLLLGFAGRSPLVDILVVVFVIAAVTAPALGTILLA 60

Query: 61  RFFRKXXXXXXXXXXXXXXXXXXXXDDPFAQMTXXXXXXXXXXXXXXXXXXPLFQSGHXX 120
           RFFRK                    DDPFA+MT                  PLFQSG   
Sbjct: 61  RFFRK--------PRAGAGGTGAAVDDPFAKMTLAVSLAVAVLVSATLILLPLFQSGGLG 112

Query: 121 XXXXXXXXXXXXXCASRVRGVLLPNXXXXXXXXXXXXXXXXERGIKPTLSVSLAAICLVL 180
                        CA+R RGVLL N                ER  K TL VSLAA+  +L
Sbjct: 113 ALAFAGAALVVGACAARARGVLLAN--------AHGGAPATERFAKATLMVSLAAVFSLL 164

Query: 181 VAPWRLAVGILDAPSQR 197
           V    +AVGILDAP+QR
Sbjct: 165 V--LCIAVGILDAPAQR 179



>Os06g0201000 Conserved hypothetical protein
          Length = 252

 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 81/195 (41%), Positives = 95/195 (48%), Gaps = 17/195 (8%)

Query: 1   MSRVIRNIIVVAMGAGALGGPDALRLLLAFAGKSPLVDILIAVFVIAAVTAPALGTMLLA 60
           M+ V+  IIV+AMG GALGGP+ALRLLL FAG+SPLVDI I VFVIAA+ APALGTMLLA
Sbjct: 1   MAGVVPMIIVLAMGGGALGGPEALRLLLTFAGRSPLVDIGIVVFVIAALAAPALGTMLLA 60

Query: 61  RFFRKXXXXXXXXXXXXXXXXXXXXDDPFAQMTXXXXXXXXXXXXXXXXXXPLFQSGHXX 120
            F+R                      D  A+MT                  PLFQSG+  
Sbjct: 61  CFYRTPRGARGAAAAAA---------DLLAKMTLAVSMAVALLVSASLLVLPLFQSGNVV 111

Query: 121 XXXXXXXXXXXXXCAS--RVRGVLLPNXXXXXXXXXXXXXXXXERGIKPTLSVSLAAICL 178
                         AS  RVRGV                     R    TL+VSLAA+C+
Sbjct: 112 VGLLALAVPAFVVGASAARVRGV----AHLRRARNASGAVTDAGRAAVTTLTVSLAAVCI 167

Query: 179 VLVAPWRLAVGILDA 193
           +L     +AVG LDA
Sbjct: 168 LL--GSCVAVGGLDA 180



>Os06g0201300 
          Length = 116

 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/56 (58%), Positives = 44/56 (78%)

Query: 9  IVVAMGAGALGGPDALRLLLAFAGKSPLVDILIAVFVIAAVTAPALGTMLLARFFR 64
          IV+++G    GGP+ALR+LL  +G+SP+ DI I VF+I A TAP LGT+LLAR+FR
Sbjct: 9  IVLSLGCAVAGGPEALRILLGLSGRSPVADIAICVFLICAATAPVLGTVLLARYFR 64



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.331    0.142    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,418,500
Number of extensions: 105970
Number of successful extensions: 278
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 267
Number of HSP's successfully gapped: 5
Length of query: 281
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 181
Effective length of database: 11,814,401
Effective search space: 2138406581
Effective search space used: 2138406581
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 155 (64.3 bits)