FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0201000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.81 (0.067) R2 : 0.692
β1 : 0.812 (0.245) R2dD : 0.00752 R2D : -0.0245
β2 : 2.5 (0.2) R2dC : 0.151 R2C : 0.323
β3 : -2.33 (0.146) R2dE : 0.243 R2E : 0.422
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.76 (0.143) R2dN8 : 0.137 R2N8 : 0.0852
σ : 1.25
deviance : 720.08
__
_____
C
peak time of C : 20.4
E
wheather : radiation
threshold : 0.46
memory length : 59
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
701.22 1.24 5.81 0.934 2.49 -2.29 3.36 2.07 1.76 20.6 0.45 57 -- --
714.94 1.25 5.8 0.943 2.47 -2.58 2.37 -- 1.75 19.9 0.4599 59 -- --
721.56 1.25 5.82 0.832 2.63 -2.09 -- 0.342 1.74 20.7 0.4324 53 -- --
720.08 1.25 5.81 0.812 2.5 -2.33 -- -- 1.76 20.4 0.46 59 -- --
896.98 1.4 5.75 0.873 -- -3.3 -- 0.733 1.69 -- 0.4324 53 -- --
816.86 1.34 5.88 0.687 4.62 -- 0.532 -- 1.66 22.4 -- -- -- --
818.01 1.34 5.88 0.665 4.62 -- -- -- 1.66 22.4 -- -- -- --
900.49 1.4 5.76 0.863 -- -3.29 -- -- 1.69 -- 0.46 59 -- --
736.89 1.26 5.81 -- 2.55 -2.26 -- -- 1.69 20.5 0.46 59 -- --
2118.99 2.15 5.76 0.74 -- -- -- -- 1.67 -- -- -- -- --
829.68 1.35 5.9 -- 4.62 -- -- -- 1.59 22.4 -- -- -- --
919.91 1.42 5.78 -- -- -3.28 -- -- 1.59 -- 0.6236 51 -- --
2133.44 2.16 5.78 -- -- -- -- -- 1.59 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 700.94 wind 3.0 14400 < th dose independent rect. 3 2
3 702.14 wind 3.0 14400 > th dose independent rect. 3 2
9 706.03 temperature 30.0 43200 > th dose dependent rect. 8 1
24 706.36 radiation 1.0 720 < th dose independent rect. 9 2
25 706.36 radiation 1.0 720 < th dose dependent rect. 9 2
26 706.39 humidity 90.0 43200 < th dose dependent rect. 4 1
27 706.89 radiation 40.0 43200 > th dose dependent rect. 11 1
34 708.58 wind 1.0 43200 < th dose dependent rect. 8 5
35 708.75 temperature 30.0 43200 > th dose independent rect. 8 1
68 709.68 wind 3.0 43200 > th dose independent rect. 6 1
70 709.68 precipitation 0.1 14400 > th dose independent rect. 7 11
72 709.91 radiation 1.0 30 < th dose dependent rect. 7 23
73 709.93 precipitation 0.1 14400 < th dose independent rect. 7 11
75 709.93 precipitation 0.1 14400 < th dose dependent rect. 7 11
76 709.95 radiation 1.0 30 < th dose dependent rect. 1 23
79 710.02 radiation 1.0 30 > th dose independent rect. 7 23
81 710.06 radiation 40.0 43200 > th dose independent rect. 10 2
102 710.38 temperature 30.0 43200 < th dose independent rect. 21 12
103 710.39 wind 5.0 14400 < th dose dependent rect. 3 1
108 710.59 temperature 30.0 43200 < th dose independent rect. 1 8
111 710.65 radiation 1.0 90 < th dose independent rect. 5 23
112 710.67 radiation 1.0 30 < th dose dependent no NA NA
113 710.67 humidity 80.0 14400 < th dose dependent rect. 6 1
114 710.67 radiation 1.0 30 < th dose dependent rect. 11 21
120 710.67 radiation 1.0 30 < th dose dependent rect. 13 23
121 710.67 radiation 1.0 30 < th dose dependent rect. 15 23
123 710.69 temperature 30.0 43200 < th dose independent rect. 5 4
130 710.82 wind 3.0 14400 < th dose independent rect. 24 5
138 711.04 radiation 1.0 30 < th dose dependent rect. 17 23
139 711.04 radiation 1.0 30 < th dose dependent rect. 19 23
140 711.06 radiation 1.0 10 < th dose dependent rect. 11 19
147 711.12 temperature 30.0 43200 < th dose independent rect. 8 1
149 711.20 radiation 40.0 43200 < th dose independent rect. 9 3
151 711.21 humidity 80.0 43200 < th dose dependent rect. 1 1
158 711.46 wind 1.0 43200 < th dose independent rect. 8 4
161 711.53 radiation 1.0 90 < th dose dependent rect. 5 23
162 711.55 humidity 80.0 43200 < th dose dependent rect. 1 4
190 711.73 radiation 20.0 43200 < th dose independent rect. 8 2
194 711.91 radiation 40.0 43200 > th dose independent rect. 7 5
212 711.99 wind 1.0 43200 > th dose independent rect. 8 4
229 712.08 radiation 40.0 43200 > th dose dependent sin 9 NA
231 712.12 radiation 1.0 30 < th dose independent rect. 19 23
247 712.42 humidity 80.0 14400 > th dose independent rect. 23 8
262 712.55 radiation 1.0 90 > th dose independent rect. 9 23
263 712.58 radiation 20.0 43200 > th dose independent rect. 9 1
269 712.71 humidity 80.0 14400 < th dose independent rect. 22 9
272 712.83 humidity 80.0 14400 < th dose independent rect. 5 2
273 712.90 radiation 40.0 43200 < th dose independent rect. 21 15
275 712.91 radiation 40.0 43200 < th dose independent rect. 24 12
278 712.92 radiation 40.0 43200 < th dose independent rect. 5 7
286 712.93 radiation 40.0 43200 < th dose independent rect. 17 19
290 712.95 radiation 20.0 43200 < th dose independent rect. 21 13
292 712.96 radiation 20.0 43200 < th dose independent rect. 1 9
297 712.97 radiation 20.0 43200 < th dose independent rect. 5 5
301 712.98 radiation 20.0 43200 < th dose independent rect. 18 16
308 713.05 radiation 1.0 43200 > th dose dependent rect. 6 1
343 713.19 precipitation 0.1 14400 > th dose dependent rect. 7 11
346 713.24 humidity 80.0 14400 > th dose independent rect. 23 4
353 713.29 precipitation 0.1 14400 > th dose independent rect. 12 6
382 713.48 radiation 1.0 30 < th dose dependent rect. 13 19
390 713.50 precipitation 0.1 14400 > th dose independent rect. 14 4
391 713.51 humidity 80.0 14400 < th dose independent rect. 22 5
395 713.59 humidity 80.0 43200 > th dose independent rect. 22 11
397 713.60 precipitation 0.1 14400 < th dose independent rect. 12 6
398 713.60 precipitation 0.1 14400 < th dose dependent rect. 12 6
415 713.71 wind 3.0 43200 < th dose independent rect. 6 1
417 713.72 precipitation 0.1 14400 < th dose independent rect. 14 4
419 713.72 precipitation 0.1 14400 < th dose dependent rect. 14 4
421 713.74 radiation 40.0 43200 < th dose independent rect. 14 22
446 713.83 radiation 20.0 43200 < th dose dependent rect. 6 1
455 713.85 radiation 40.0 43200 < th dose dependent rect. 6 1
495 714.02 humidity 80.0 14400 < th dose independent rect. 22 3
502 714.13 humidity 80.0 43200 < th dose dependent rect. 20 10
514 714.26 wind 3.0 14400 > th dose independent rect. 24 5
515 714.28 humidity 80.0 14400 > th dose independent rect. 4 3
533 714.42 radiation 1.0 30 < th dose dependent rect. 13 17
539 714.47 humidity 80.0 43200 < th dose independent rect. 21 12
542 714.56 radiation 20.0 43200 < th dose independent sin 10 NA
571 714.81 radiation 40.0 43200 > th dose independent sin 10 NA
673 715.23 radiation 40.0 43200 < th dose independent sin 8 NA
721 715.39 wind 9.0 43200 > th dose dependent rect. 13 1
722 715.39 wind 3.0 14400 < th dose dependent rect. 24 5
742 715.51 radiation 1.0 30 < th dose independent rect. 7 23
750 715.55 wind 9.0 43200 < th dose independent rect. 13 1
751 715.55 precipitation 0.1 14400 > th dose dependent rect. 13 5
753 715.55 radiation 20.0 43200 < th dose dependent rect. 21 10
756 715.58 radiation 20.0 43200 < th dose dependent rect. 23 8
757 715.59 wind 3.0 43200 > th dose independent rect. 1 16
758 715.59 radiation 1.0 30 < th dose independent rect. 1 23
779 715.66 radiation 20.0 43200 < th dose dependent rect. 4 3
785 715.68 radiation 40.0 43200 < th dose dependent rect. 21 10
790 715.73 radiation 40.0 43200 < th dose dependent rect. 23 8
812 715.77 radiation 40.0 43200 < th dose dependent rect. 9 1
864 715.86 radiation 40.0 43200 < th dose dependent rect. 4 3
933 716.13 radiation 40.0 43200 < th dose independent rect. 14 1
937 716.15 humidity 80.0 43200 < th dose independent rect. 20 10
939 716.17 precipitation 0.1 14400 > th dose dependent rect. 6 15
974 716.30 wind 9.0 43200 > th dose independent rect. 13 1
976 716.31 radiation 1.0 30 > th dose independent no NA NA
977 716.31 radiation 1.0 30 > th dose independent rect. 5 14