BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0198500 Os06g0198500|J075080L11
(196 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0198500 Protein of unknown function DUF985 family protein 410 e-115
Os08g0455800 Protein of unknown function DUF985 family protein 278 2e-75
Os06g0198600 Protein of unknown function DUF985 family protein 84 7e-17
>Os06g0198500 Protein of unknown function DUF985 family protein
Length = 196
Score = 410 bits (1053), Expect = e-115, Method: Compositional matrix adjust.
Identities = 196/196 (100%), Positives = 196/196 (100%)
Query: 1 MALTSVEKKTAAEIVAMLDLQRHPDGGFYLETFRDPSISLPKSALPPRYKVDRSGSSAIY 60
MALTSVEKKTAAEIVAMLDLQRHPDGGFYLETFRDPSISLPKSALPPRYKVDRSGSSAIY
Sbjct: 1 MALTSVEKKTAAEIVAMLDLQRHPDGGFYLETFRDPSISLPKSALPPRYKVDRSGSSAIY 60
Query: 61 FLLPAGEIAKLHRIPCAETWHYYMGEPLTVFEVHDDGQIKMTVVGPDLRHGQRPQYTVPP 120
FLLPAGEIAKLHRIPCAETWHYYMGEPLTVFEVHDDGQIKMTVVGPDLRHGQRPQYTVPP
Sbjct: 61 FLLPAGEIAKLHRIPCAETWHYYMGEPLTVFEVHDDGQIKMTVVGPDLRHGQRPQYTVPP 120
Query: 121 NVWFGAFLTCDIESFTEDGSVFVKTPGRDPELHYSFVGVTCAPAFQFEDNEMATRETMKT 180
NVWFGAFLTCDIESFTEDGSVFVKTPGRDPELHYSFVGVTCAPAFQFEDNEMATRETMKT
Sbjct: 121 NVWFGAFLTCDIESFTEDGSVFVKTPGRDPELHYSFVGVTCAPAFQFEDNEMATRETMKT 180
Query: 181 LAPKAEAFINYLVPSD 196
LAPKAEAFINYLVPSD
Sbjct: 181 LAPKAEAFINYLVPSD 196
>Os08g0455800 Protein of unknown function DUF985 family protein
Length = 194
Score = 278 bits (711), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 125/186 (67%), Positives = 153/186 (82%)
Query: 10 TAAEIVAMLDLQRHPDGGFYLETFRDPSISLPKSALPPRYKVDRSGSSAIYFLLPAGEIA 69
TA E+ A+LDL+ HP+GG+Y ETFRD S+S+ + LPP+YKVDR+ S+AIYFLLP+G ++
Sbjct: 7 TATEVAALLDLKPHPEGGYYTETFRDGSVSVTTAQLPPQYKVDRAISTAIYFLLPSGSVS 66
Query: 70 KLHRIPCAETWHYYMGEPLTVFEVHDDGQIKMTVVGPDLRHGQRPQYTVPPNVWFGAFLT 129
LHRIPCAETWH+Y GEPLTVFE+HDDG I +TV+GP L GQRPQYTVPPNVWFG+F T
Sbjct: 67 HLHRIPCAETWHFYKGEPLTVFELHDDGHIDLTVIGPHLEAGQRPQYTVPPNVWFGSFPT 126
Query: 130 CDIESFTEDGSVFVKTPGRDPELHYSFVGVTCAPAFQFEDNEMATRETMKTLAPKAEAFI 189
D+ESF DGSV VK+ RDPELHYS VG TCAP FQ+ED EMA + +K++APKAE F+
Sbjct: 127 LDVESFASDGSVLVKSRKRDPELHYSLVGCTCAPGFQYEDFEMANFDDVKSIAPKAEPFL 186
Query: 190 NYLVPS 195
YL+PS
Sbjct: 187 KYLIPS 192
>Os06g0198600 Protein of unknown function DUF985 family protein
Length = 54
Score = 84.0 bits (206), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 37/41 (90%), Positives = 39/41 (95%)
Query: 50 KVDRSGSSAIYFLLPAGEIAKLHRIPCAETWHYYMGEPLTV 90
KVDR+ S+AIYFLLPAGEI KLHRIPCAETWHYYMGEPLTV
Sbjct: 11 KVDRAVSNAIYFLLPAGEIVKLHRIPCAETWHYYMGEPLTV 51
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.137 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,587,249
Number of extensions: 336147
Number of successful extensions: 464
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 464
Number of HSP's successfully gapped: 3
Length of query: 196
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 100
Effective length of database: 12,023,257
Effective search space: 1202325700
Effective search space used: 1202325700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 153 (63.5 bits)