BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0193300 Os06g0193300|AK062548
         (127 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0193300  Conserved hypothetical protein                      265   4e-72
Os02g0782900  Conserved hypothetical protein                      165   7e-42

>Os06g0193300 Conserved hypothetical protein
          Length = 127

 Score =  265 bits (678), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 127/127 (100%), Positives = 127/127 (100%)

Query: 1   MAARSSLHPSSMASIPRLIGTRKAALRFRAPAHGGTSSSQLSIAAATANKKVFEDQLRGI 60
           MAARSSLHPSSMASIPRLIGTRKAALRFRAPAHGGTSSSQLSIAAATANKKVFEDQLRGI
Sbjct: 1   MAARSSLHPSSMASIPRLIGTRKAALRFRAPAHGGTSSSQLSIAAATANKKVFEDQLRGI 60

Query: 61  VCYRDDKGEMVCEGYDEGPRLGMRLPEKACFPWPMEVQITDFIELATFRVFEDADVLQIK 120
           VCYRDDKGEMVCEGYDEGPRLGMRLPEKACFPWPMEVQITDFIELATFRVFEDADVLQIK
Sbjct: 61  VCYRDDKGEMVCEGYDEGPRLGMRLPEKACFPWPMEVQITDFIELATFRVFEDADVLQIK 120

Query: 121 NDQKRQI 127
           NDQKRQI
Sbjct: 121 NDQKRQI 127



>Os02g0782900 Conserved hypothetical protein
          Length = 132

 Score =  165 bits (418), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 88/131 (67%), Positives = 101/131 (77%), Gaps = 6/131 (4%)

Query: 1   MAARSSLHP-SSMASIPRLIGTRKAAL-RF-RAPAHGGT-SSSQLSIAAATANKKVFEDQ 56
           MAA SS H  SS  S PR  GTRKA + +F RAP H  + S++ LS  AA A K VFEDQ
Sbjct: 4   MAAMSSCHHLSSSISTPRF-GTRKATMAKFVRAPVHSCSCSNAHLSQTAAPA-KMVFEDQ 61

Query: 57  LRGIVCYRDDKGEMVCEGYDEGPRLGMRLPEKACFPWPMEVQITDFIELATFRVFEDADV 116
           +RG+VCYRDDKG M+CEGYDEGPRLGMRLPEKACFPWPM VQ+TDFIEL+T RVFED D 
Sbjct: 62  VRGVVCYRDDKGNMICEGYDEGPRLGMRLPEKACFPWPMGVQVTDFIELSTLRVFEDVDS 121

Query: 117 LQIKNDQKRQI 127
           LQ + DQK ++
Sbjct: 122 LQPRKDQKGKL 132



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.134    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,145,991
Number of extensions: 163624
Number of successful extensions: 378
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 377
Number of HSP's successfully gapped: 2
Length of query: 127
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 38
Effective length of database: 12,388,755
Effective search space: 470772690
Effective search space used: 470772690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 150 (62.4 bits)