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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0193300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.54 (0.0665) R2 : 0.358
β1 : -4.36 (0.388) R2dD : 0.699 R2D : -0.235
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.96 (0.222) R2dE : 0.402 R2E : -0.0236
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -9.49 (1.47) R2dD*E : 0.233 R2D*E : -0.511
γ1 : -1.05 (0.152) R2dN8 : 0.155 R2N8 : -0.151
σ : 1.02
deviance : 478.32
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 22.89
memory length : 954
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 7.75
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
467.69 1.02 4.55 -4.62 0.39 2.75 1.5 -10.3 -1.06 5.64 23.2 1058 8.8 --
509.38 1.05 4.28 -2.38 0.217 2.15 1.93 -- -0.538 8.06 20.84 822 8.4 --
471.96 1.01 4.55 -4.54 0.427 2.69 -- -9.93 -1.04 4.37 23.37 1075 8.83 --
511.5 1.05 4.27 -2.16 0.48 1.85 -- -- -0.381 4.83 22.71 917 8.5 --
478.32 1.02 4.54 -4.36 -- 2.96 -- -9.49 -1.05 -- 22.89 954 7.75 --
597.21 1.15 4.21 -1.75 1.12 -- 0.0258 -- -0.114 3.72 -- -- -- --
597.21 1.14 4.21 -1.75 1.12 -- -- -- -0.114 3.71 -- -- -- --
516.28 1.06 4.3 -2.34 -- 2.47 -- -- -0.457 -- 15.27 942 9.3 --
630.27 1.17 4.21 -- 0.573 1.41 -- -- -0.103 4.5 22.39 877 8.16 --
667.12 1.21 4.22 -1.71 -- -- -- -- -0.0841 -- -- -- -- --
678.28 1.22 4.17 -- 1.09 -- -- -- 0.0813 3.72 -- -- -- --
641.91 1.18 4.22 -- -- 1.81 -- -- -0.151 -- 21.53 815 7.72 --
743.98 1.27 4.17 -- -- -- -- -- 0.105 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 490.28 temperature 20 720 > th dose dependent rect. 16 15
3 491.36 temperature 25 1440 > th dose dependent rect. 14 17
24 492.20 temperature 25 1440 > th dose dependent sin 15 NA
61 493.84 temperature 25 1440 > th dose dependent rect. 16 1
202 501.79 temperature 30 720 < th dose dependent rect. 17 13
215 502.39 radiation 20 14400 < th dose dependent rect. 21 8
253 503.60 temperature 30 720 < th dose dependent sin 13 NA
256 503.76 temperature 25 1440 > th dose dependent no NA NA
259 503.80 temperature 25 1440 > th dose dependent rect. 6 23
262 503.83 temperature 25 1440 > th dose dependent rect. 3 23
279 504.01 temperature 25 1440 > th dose dependent rect. 22 23
293 504.18 temperature 25 1440 > th dose independent rect. 16 8
325 504.60 radiation 30 14400 < th dose independent rect. 16 11
330 504.72 temperature 25 1440 < th dose independent rect. 16 8
341 504.91 radiation 1 1440 < th dose dependent sin 14 NA
343 504.93 radiation 1 1440 < th dose dependent rect. 18 9
346 504.97 radiation 1 1440 < th dose dependent rect. 18 7
361 505.08 radiation 1 1440 < th dose dependent rect. 8 22
375 505.38 radiation 1 1440 < th dose dependent rect. 17 2
384 505.56 radiation 1 1440 < th dose dependent rect. 17 5
389 505.63 temperature 25 1440 > th dose dependent rect. 16 23
401 505.84 temperature 25 1440 > th dose independent sin 15 NA
402 505.84 radiation 20 14400 < th dose independent rect. 3 3
413 506.01 humidity 90 43200 > th dose dependent rect. 21 2
419 506.10 temperature 25 1440 < th dose independent sin 15 NA
424 506.16 radiation 1 1440 < th dose dependent rect. 13 17
430 506.24 temperature 30 720 < th dose dependent rect. 18 9
455 506.58 radiation 30 14400 < th dose independent rect. 16 3
513 507.53 radiation 1 1440 > th dose independent sin 15 NA
580 508.39 radiation 1 1440 < th dose independent sin 15 NA
583 508.46 humidity 90 43200 < th dose independent rect. 20 1
588 508.49 humidity 90 43200 > th dose independent rect. 22 1
606 508.65 radiation 1 1440 > th dose independent rect. 8 22
613 508.75 humidity 90 43200 > th dose dependent rect. 3 8
614 508.76 temperature 25 1440 > th dose independent rect. 10 21
619 508.82 wind 5 43200 > th dose dependent rect. 10 10
637 509.07 temperature 25 1440 > th dose independent rect. 15 16
647 509.15 humidity 90 43200 < th dose independent rect. 22 1
660 509.23 radiation 40 43200 > th dose independent rect. 10 1
661 509.23 radiation 1 1440 < th dose independent rect. 8 22
663 509.23 radiation 1 1440 < th dose dependent rect. 17 23
665 509.25 temperature 25 1440 > th dose independent rect. 10 15
676 509.32 radiation 1 1440 > th dose independent rect. 14 16
683 509.40 humidity 90 43200 > th dose dependent rect. 4 5
686 509.40 radiation 1 1440 < th dose dependent rect. 8 19
689 509.42 radiation 1 1440 < th dose dependent rect. 8 17
695 509.45 temperature 25 1440 > th dose independent rect. 10 19
713 509.55 humidity 90 43200 > th dose dependent rect. 4 3
716 509.57 temperature 25 1440 < th dose independent rect. 15 16
718 509.58 radiation 1 1440 > th dose independent rect. 16 3
732 509.60 radiation 10 14400 < th dose independent rect. 21 8
750 509.74 radiation 1 1440 < th dose dependent rect. 8 11
755 509.76 wind 7 43200 < th dose independent rect. 6 14
764 509.80 wind 5 43200 > th dose dependent rect. 13 7
776 509.84 radiation 1 1440 < th dose dependent rect. 8 14
778 509.84 radiation 1 1440 < th dose dependent rect. 21 22
779 509.84 radiation 1 1440 < th dose dependent rect. 12 23
780 509.85 humidity 90 43200 > th dose dependent rect. 5 1
782 509.85 radiation 1 1440 < th dose dependent rect. 23 20
795 509.91 radiation 1 1440 < th dose dependent rect. 23 23
798 509.93 humidity 90 43200 > th dose independent rect. 20 3
803 509.94 wind 5 43200 > th dose dependent rect. 10 7
811 509.96 radiation 40 43200 > th dose dependent rect. 10 1
814 509.96 radiation 1 1440 < th dose dependent rect. 4 23
818 509.97 radiation 1 1440 < th dose dependent rect. 4 21
821 509.98 radiation 1 1440 < th dose dependent no NA NA
824 509.98 radiation 1 1440 < th dose dependent rect. 2 23
825 509.99 wind 7 43200 > th dose independent rect. 5 15
828 509.99 humidity 90 43200 > th dose dependent rect. 19 18
867 510.16 radiation 1 1440 < th dose dependent rect. 4 15
872 510.17 radiation 1 1440 < th dose dependent rect. 2 17
874 510.18 radiation 1 1440 < th dose independent rect. 13 17
875 510.18 temperature 25 1440 < th dose independent rect. 10 21
885 510.22 wind 3 43200 > th dose dependent rect. 13 1
886 510.22 radiation 1 1440 < th dose dependent rect. 4 18
890 510.23 radiation 1 1440 < th dose dependent rect. 2 20
951 510.36 wind 5 43200 > th dose dependent sin 20 NA
970 510.44 radiation 1 1440 < th dose independent rect. 16 10
990 510.50 temperature 25 1440 < th dose independent rect. 10 15