BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0193300 Os06g0193300|AK062548
         (127 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G14280.1  | chr3:4761654-4762286 REVERSE LENGTH=142             63   5e-11

>AT3G14280.1 | chr3:4761654-4762286 REVERSE LENGTH=142
          Length = 141

 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 3/70 (4%)

Query: 35  GTSSSQLSIAAATANKKVFEDQLRGIVCYRDDKGEMVCEGYDEGPRLGMRLPEKACFPWP 94
            T S    I  +T N  VFED ++GI+CY DD GE++CEGYDEGPR   + P  A +   
Sbjct: 40  ATVSQPQPIRYSTKNI-VFEDPIQGIICYTDDNGEVICEGYDEGPRCPTQSPMVASY--S 96

Query: 95  MEVQITDFIE 104
            EV+I D ++
Sbjct: 97  REVEILDLLQ 106



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.134    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,529,679
Number of extensions: 94723
Number of successful extensions: 184
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 1
Length of query: 127
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 40
Effective length of database: 8,721,377
Effective search space: 348855080
Effective search space used: 348855080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 105 (45.1 bits)