BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0190500 Os06g0190500|J033118L15
(155 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0190500 Conserved hypothetical protein 289 6e-79
Os06g0190700 Ionotropic glutamate receptor family protein 203 5e-53
Os06g0188800 Ionotropic glutamate receptor family protein 134 3e-32
Os06g0189100 82 1e-16
Os06g0188700 82 1e-16
>Os06g0190500 Conserved hypothetical protein
Length = 155
Score = 289 bits (739), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 143/155 (92%), Positives = 143/155 (92%)
Query: 1 MLKRIYKTXXXXXXXXXXXXLVHNLSTAMLDVTSGDEGSRMETKWFGAEAVSPSNAIPNT 60
MLKRIYKT LVHNLSTAMLDVTSGDEGSRMETKWFGAEAVSPSNAIPNT
Sbjct: 1 MLKRIYKTPGFGFVFPPGFPLVHNLSTAMLDVTSGDEGSRMETKWFGAEAVSPSNAIPNT 60
Query: 61 DSAPLTLRSFSGLFIITGCISTLMLMIRFSMSILANYTQIRDSDVQSPDVGGRNDAHEES 120
DSAPLTLRSFSGLFIITGCISTLMLMIRFSMSILANYTQIRDSDVQSPDVGGRNDAHEES
Sbjct: 61 DSAPLTLRSFSGLFIITGCISTLMLMIRFSMSILANYTQIRDSDVQSPDVGGRNDAHEES 120
Query: 121 NQAQNSMGCIVVDIHLHEVRIGSSQDIHGSVERAS 155
NQAQNSMGCIVVDIHLHEVRIGSSQDIHGSVERAS
Sbjct: 121 NQAQNSMGCIVVDIHLHEVRIGSSQDIHGSVERAS 155
>Os06g0190700 Ionotropic glutamate receptor family protein
Length = 566
Score = 203 bits (516), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 105/155 (67%), Positives = 113/155 (72%), Gaps = 1/155 (0%)
Query: 1 MLKRIYKTXXXXXXXXXXXXLVHNLSTAMLDVTSGDEGSRMETKWFGAEAVSPSNAIPNT 60
ML RIYKT LVHNLSTA+LDVT GDEGSR+E KWFG A PS AIPNT
Sbjct: 391 MLSRIYKTPGFGFAFPPGFPLVHNLSTAILDVTGGDEGSRIEAKWFGTTAAPPSYAIPNT 450
Query: 61 DSAPLTLRSFSGLFIITGCISTLMLMIRFSMSILANYTQIRDSDVQSPDVGGRNDAHEES 120
DS PLTL+SFSGLFIITGCIS LMLMI S S+LANYT+IRDS+V+SPD G N EE
Sbjct: 451 DSTPLTLQSFSGLFIITGCISALMLMISISKSVLANYTRIRDSEVRSPDADGGNGGREER 510
Query: 121 NQAQNSMGCIVVDIHL-HEVRIGSSQDIHGSVERA 154
N AQN MG VD HE+RI SSQDIHGSVERA
Sbjct: 511 NSAQNVMGDGYVDDRPHHEIRIDSSQDIHGSVERA 545
>Os06g0188800 Ionotropic glutamate receptor family protein
Length = 235
Score = 134 bits (336), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 66/79 (83%), Positives = 66/79 (83%)
Query: 1 MLKRIYKTXXXXXXXXXXXXLVHNLSTAMLDVTSGDEGSRMETKWFGAEAVSPSNAIPNT 60
MLKRIYKT LVHNLSTAMLDVTSGDEGSRMETKWFGAEAVSPSNAIPNT
Sbjct: 152 MLKRIYKTPGFGFVFPPGFPLVHNLSTAMLDVTSGDEGSRMETKWFGAEAVSPSNAIPNT 211
Query: 61 DSAPLTLRSFSGLFIITGC 79
DSAPLTLRSFSGLFIITG
Sbjct: 212 DSAPLTLRSFSGLFIITGV 230
>Os06g0189100
Length = 397
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 62/93 (66%), Gaps = 6/93 (6%)
Query: 1 MLKRIYKTXXXXXXXXXXXXLVHNLSTAMLDVTSGDEGSRMETKWFGAEAVS------PS 54
M+ R YKT LVH+LSTA+L++T EGS++E KWFG+ S PS
Sbjct: 208 MVNRFYKTPGFGFVFPLGSPLVHDLSTAILNLTGETEGSKIEEKWFGSSEQSTGGDANPS 267
Query: 55 NAIPNTDSAPLTLRSFSGLFIITGCISTLMLMI 87
++ ++DS PLTL+SFSGLFII+GCIS LML+I
Sbjct: 268 SSSSSSDSNPLTLQSFSGLFIISGCISALMLLI 300
>Os06g0188700
Length = 702
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 62/92 (67%), Gaps = 5/92 (5%)
Query: 1 MLKRIYKTXXXXXXXXXXXXLVHNLSTAMLDVTSGDEGSRMETKWFGA-EAVSPSNAIPN 59
M+ R YKT LVH+LSTA+L++T EGS++E KWFG+ E + +A P+
Sbjct: 513 MVNRFYKTPGFGFVFPLGSPLVHDLSTAILNLTGETEGSKIEEKWFGSSEQSTGGDANPS 572
Query: 60 TDSA----PLTLRSFSGLFIITGCISTLMLMI 87
+ S+ PLTL+SFSGLFII+GCIS LML+I
Sbjct: 573 SSSSSDSNPLTLQSFSGLFIISGCISALMLLI 604
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.130 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,379,503
Number of extensions: 152733
Number of successful extensions: 397
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 400
Number of HSP's successfully gapped: 5
Length of query: 155
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 63
Effective length of database: 12,232,113
Effective search space: 770623119
Effective search space used: 770623119
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 151 (62.8 bits)