Os06g0188800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ionotropic glutamate receptor family protein.
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Os06g0188800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ionotropic glutamate receptor family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.73 | 0.269 | 10.7 | -0.165 | 1.26 | 0.448 | -0.366 | -0.438 | -0.116 | 19.8 | 0.03398 | 30 | -- | -- |
| 33.41 | 0.269 | 10.7 | -0.189 | 1.29 | 0.395 | -0.786 | -- | -0.133 | 20 | 0.1576 | 29 | -- | -- |
| 33.09 | 0.268 | 10.7 | -0.139 | 1.27 | 0.451 | -- | -0.545 | -0.117 | 19.8 | 0.04 | 32 | -- | -- |
| 35.1 | 0.276 | 10.7 | -0.182 | 1.27 | 0.417 | -- | -- | -0.12 | 19.9 | 0.01088 | 19 | -- | -- |
| 89.79 | 0.444 | 10.6 | -0.144 | -- | 0.911 | -- | -0.729 | -0.0707 | -- | 0.04 | 32 | -- | -- |
| 36.99 | 0.285 | 10.7 | -0.247 | 1.59 | -- | -0.837 | -- | -0.13 | 20.9 | -- | -- | -- | -- |
| 39.37 | 0.294 | 10.7 | -0.218 | 1.59 | -- | -- | -- | -0.129 | 20.9 | -- | -- | -- | -- |
| 93.25 | 0.452 | 10.6 | -0.17 | -- | 0.907 | -- | -- | -0.0797 | -- | 5.979e-06 | 20 | -- | -- |
| 35.87 | 0.279 | 10.7 | -- | 1.26 | 0.415 | -- | -- | -0.107 | 19.9 | 0.04 | 19 | -- | -- |
| 184.24 | 0.634 | 10.6 | -0.218 | -- | -- | -- | -- | -0.14 | -- | -- | -- | -- | -- |
| 40.63 | 0.298 | 10.7 | -- | 1.59 | -- | -- | -- | -0.105 | 20.9 | -- | -- | -- | -- |
| 94.01 | 0.453 | 10.6 | -- | -- | 0.909 | -- | -- | -0.0607 | -- | 5.979e-06 | 20 | -- | -- |
| 185.49 | 0.636 | 10.6 | -- | -- | -- | -- | -- | -0.116 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.66 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 2 |
| 3 | 28.79 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 4 |
| 4 | 28.83 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 3 |
| 16 | 29.12 | wind | 5.0 | 270 | < th | dose independent | rect. | 4 | 2 |
| 17 | 29.15 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 21 | 29.26 | wind | 9.0 | 90 | < th | dose dependent | rect. | 4 | 5 |
| 24 | 29.29 | wind | 5.0 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 32 | 29.37 | radiation | 20.0 | 90 | < th | dose independent | rect. | 4 | 5 |
| 35 | 29.41 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 4 |
| 36 | 29.41 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 37 | 29.42 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 4 | 2 |
| 40 | 29.44 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 2 |
| 42 | 29.44 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 2 |
| 45 | 29.45 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 22 |
| 48 | 29.46 | radiation | 10.0 | 270 | < th | dose independent | rect. | 4 | 2 |
| 51 | 29.48 | wind | 7.0 | 10 | < th | dose dependent | rect. | 5 | 4 |
| 53 | 29.49 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 20 |
| 54 | 29.49 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 5 | 4 |
| 55 | 29.50 | humidity | 70.0 | 90 | > th | dose independent | rect. | 4 | 5 |
| 56 | 29.50 | radiation | 20.0 | 270 | < th | dose independent | rect. | 17 | 14 |
| 68 | 29.54 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 14 |
| 72 | 29.54 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 14 |
| 74 | 29.55 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 2 |
| 76 | 29.55 | temperature | 30.0 | 270 | < th | dose independent | rect. | 4 | 2 |
| 77 | 29.55 | humidity | 50.0 | 270 | > th | dose independent | rect. | 4 | 2 |
| 80 | 29.55 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 4 | 2 |
| 87 | 29.55 | temperature | 30.0 | 90 | < th | dose independent | rect. | 4 | 5 |
| 88 | 29.55 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 22 |
| 92 | 29.56 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 9 | 19 |
| 107 | 29.57 | temperature | 10.0 | 90 | > th | dose independent | rect. | 4 | 5 |
| 109 | 29.57 | humidity | 50.0 | 90 | > th | dose independent | rect. | 4 | 5 |
| 110 | 29.57 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 4 | 5 |
| 111 | 29.57 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 4 | 5 |
| 113 | 29.57 | temperature | 10.0 | 90 | > th | dose independent | rect. | 9 | 19 |
| 128 | 29.58 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 10 |
| 129 | 29.58 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 10 |
| 130 | 29.58 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 14 |
| 132 | 29.58 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 133 | 29.58 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 4 | 2 |
| 139 | 29.59 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 140 | 29.60 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 10 |
| 141 | 29.60 | wind | 9.0 | 90 | < th | dose independent | rect. | 9 | 19 |
| 142 | 29.61 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 10 |
| 143 | 29.61 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 9 | 19 |
| 144 | 29.61 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 4 | 4 |
| 149 | 29.64 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 4 | 2 |
| 152 | 29.65 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 5 | 2 |
| 167 | 29.68 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 14 |
| 169 | 29.68 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 5 | 17 |
| 194 | 29.75 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 4 | 2 |
| 195 | 29.76 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 197 | 29.77 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 20 |
| 202 | 29.79 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 10 |
| 203 | 29.79 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 4 | 5 |
| 204 | 29.79 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 10 |
| 229 | 29.85 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 7 | 22 |
| 233 | 29.86 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 17 | 14 |
| 257 | 29.89 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 14 |
| 259 | 29.89 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 20 |
| 261 | 29.89 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 269 | 29.91 | atmosphere | 1000.0 | 10 | > th | dose dependent | rect. | 5 | 4 |
| 272 | 29.92 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 9 | 20 |
| 304 | 29.95 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 5 | 4 |
| 307 | 29.95 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 5 | 4 |
| 308 | 29.96 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 9 | 20 |
| 312 | 29.97 | radiation | 30.0 | 10 | < th | dose independent | rect. | 5 | 4 |
| 317 | 29.98 | temperature | 10.0 | 10 | > th | dose independent | rect. | 5 | 4 |
| 319 | 29.98 | temperature | 30.0 | 10 | < th | dose independent | rect. | 5 | 4 |
| 320 | 29.98 | humidity | 50.0 | 10 | > th | dose independent | rect. | 5 | 4 |
| 322 | 29.98 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 5 | 4 |
| 323 | 29.98 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 5 | 4 |
| 324 | 29.98 | temperature | 10.0 | 10 | > th | dose independent | rect. | 9 | 20 |
| 342 | 30.04 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 9 | 19 |
| 343 | 30.04 | wind | 9.0 | 10 | < th | dose independent | rect. | 9 | 20 |
| 345 | 30.04 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 9 | 19 |
| 347 | 30.05 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 350 | 30.05 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 351 | 30.05 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 5 |
| 353 | 30.05 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 19 |
| 360 | 30.06 | radiation | 20.0 | 90 | < th | dose independent | rect. | 4 | 7 |
| 382 | 30.09 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 14 |
| 441 | 30.18 | radiation | 1.0 | 30 | < th | dose dependent | sin | 10 | NA |
| 453 | 30.21 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 5 | 2 |
| 480 | 30.28 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 10 |
| 525 | 30.36 | radiation | 1.0 | 30 | > th | dose independent | sin | 10 | NA |
| 556 | 30.40 | radiation | 1.0 | 30 | < th | dose independent | sin | 10 | NA |
| 573 | 30.45 | temperature | 15.0 | 90 | > th | dose independent | rect. | 4 | 19 |
| 578 | 30.45 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 5 | 4 |
| 603 | 30.52 | temperature | 15.0 | 270 | > th | dose independent | rect. | 2 | 20 |
| 652 | 30.58 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 22 | 19 |
| 677 | 30.60 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 4 | 7 |
| 678 | 30.60 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 22 | 21 |
| 732 | 30.67 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 4 | 2 |
| 747 | 30.70 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 748 | 30.70 | wind | 1.0 | 90 | > th | dose independent | rect. | 9 | 19 |
| 774 | 30.73 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 23 | 2 |
| 800 | 30.78 | radiation | 1.0 | 30 | < th | dose independent | rect. | 22 | 19 |
| 821 | 30.81 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 4 | 5 |
| 823 | 30.81 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 22 | 10 |
| 845 | 30.82 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 859 | 30.84 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 23 | 5 |
| 862 | 30.84 | temperature | 15.0 | 270 | > th | dose independent | rect. | 1 | 22 |
| 867 | 30.84 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 22 | 8 |
| 869 | 30.84 | wind | 9.0 | 90 | < th | dose dependent | rect. | 9 | 19 |
| 894 | 30.87 | wind | 5.0 | 270 | < th | dose independent | rect. | 23 | 2 |
| 936 | 30.89 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 22 | 7 |
| 937 | 30.89 | radiation | 1.0 | 10 | < th | dose independent | rect. | 22 | 8 |
| 976 | 30.93 | temperature | 10.0 | 270 | > th | dose independent | rect. | 23 | 2 |
| 977 | 30.93 | temperature | 30.0 | 270 | < th | dose independent | rect. | 23 | 2 |
| 978 | 30.93 | humidity | 50.0 | 270 | > th | dose independent | rect. | 23 | 2 |
| 981 | 30.93 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 23 | 2 |
| 982 | 30.93 | radiation | 1.0 | 270 | < th | dose independent | rect. | 23 | 2 |
| 990 | 30.93 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 22 |
| 991 | 30.93 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 23 | 2 |
| 998 | 30.93 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 22 |