BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0186900 Os06g0186900|AK105241
         (476 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0186900  AAA ATPase domain containing protein                879   0.0  
Os01g0837500  Similar to Ruvbl1 protein                           343   1e-94

>Os06g0186900 AAA ATPase domain containing protein
          Length = 476

 Score =  879 bits (2270), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/476 (92%), Positives = 439/476 (92%)

Query: 1   MAELKRLSESRDLTRIERIGAHSHIRGLGLDSSLEARGSSEGMVGQLPARRAAGLILQLI 60
           MAELKRLSESRDLTRIERIGAHSHIRGLGLDSSLEARGSSEGMVGQLPARRAAGLILQLI
Sbjct: 1   MAELKRLSESRDLTRIERIGAHSHIRGLGLDSSLEARGSSEGMVGQLPARRAAGLILQLI 60

Query: 61  RQGKIAGRAVLLAGQPGTGKTALAMGIAKSLGAETPFASVAASELFSLDLSKTEALTQAF 120
           RQGKIAGRAVLLAGQPGTGKTALAMGIAKSLGAETPFASVAASELFSLDLSKTEALTQAF
Sbjct: 61  RQGKIAGRAVLLAGQPGTGKTALAMGIAKSLGAETPFASVAASELFSLDLSKTEALTQAF 120

Query: 121 RRSIGVRXXXXXXXXXXXXXXXXXDRXXXXXXXXXXXXXXXXXXXXKTGRLTLKTTDMET 180
           RRSIGVR                 DR                    KTGRLTLKTTDMET
Sbjct: 121 RRSIGVRIKEEAEIIEGEVVEISIDRPVSAAAAAGSSAPSGVAAAGKTGRLTLKTTDMET 180

Query: 181 VYELGGKMIEALGKEKVQSGDVVALDKASGKVTKLGRSIGRSRDYDAVGPHTKFVKCPEG 240
           VYELGGKMIEALGKEKVQSGDVVALDKASGKVTKLGRSIGRSRDYDAVGPHTKFVKCPEG
Sbjct: 181 VYELGGKMIEALGKEKVQSGDVVALDKASGKVTKLGRSIGRSRDYDAVGPHTKFVKCPEG 240

Query: 241 ELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTGEIRAEVREQIDTKVAEWREEGKAE 300
           ELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTGEIRAEVREQIDTKVAEWREEGKAE
Sbjct: 241 ELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTGEIRAEVREQIDTKVAEWREEGKAE 300

Query: 301 IVPGVLFIDEVHMLDIECFSFLNRALENDMAPILVIATNRGITSIRGTNYRSPHGIPPDF 360
           IVPGVLFIDEVHMLDIECFSFLNRALENDMAPILVIATNRGITSIRGTNYRSPHGIPPDF
Sbjct: 301 IVPGVLFIDEVHMLDIECFSFLNRALENDMAPILVIATNRGITSIRGTNYRSPHGIPPDF 360

Query: 361 LDRLLIITTQPYTEDDIRKILDIRCDEEDVEMSADAKVLLTKIGVETSLRYAIHLITSAA 420
           LDRLLIITTQPYTEDDIRKILDIRCDEEDVEMSADAKVLLTKIGVETSLRYAIHLITSAA
Sbjct: 361 LDRLLIITTQPYTEDDIRKILDIRCDEEDVEMSADAKVLLTKIGVETSLRYAIHLITSAA 420

Query: 421 LACQKRKGKVVEMEDISRVYQLFLDVKRSTQYLMEYQSQYMFNEVPGEAGDDAMQS 476
           LACQKRKGKVVEMEDISRVYQLFLDVKRSTQYLMEYQSQYMFNEVPGEAGDDAMQS
Sbjct: 421 LACQKRKGKVVEMEDISRVYQLFLDVKRSTQYLMEYQSQYMFNEVPGEAGDDAMQS 476



>Os01g0837500 Similar to Ruvbl1 protein
          Length = 455

 Score =  343 bits (881), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 189/463 (40%), Positives = 282/463 (60%), Gaps = 17/463 (3%)

Query: 6   RLSESRDLTRIERIGAHSHIRGLGLDSSLEARGSSEGMVGQLPARRAAGLILQLIRQGKI 65
           R+ E +   + +RI  H+HI+GLGLD++  A G + G VGQ  AR AAGL++ +IRQ K+
Sbjct: 2   RIEEVQSAAKKQRIATHTHIKGLGLDANGAAIGLASGFVGQAAAREAAGLVVDMIRQKKM 61

Query: 66  AGRAVLLAGQPGTGKTALAMGIAKSLGAETPFASVAASELFSLDLSKTEALTQAFRRSIG 125
           AGRA+LLAG P TGKTALA+GI++ LG++ PF  +  SE++S ++ KTE L + FRR+IG
Sbjct: 62  AGRALLLAGPPATGKTALALGISQELGSKVPFCPMVGSEVYSSEVKKTEVLMENFRRAIG 121

Query: 126 VRXXXXXXXXXXXXXXXXXDRXXXXXXXXXXXXXXXXXXXXKTGRLTLKTTDMETVYELG 185
           +R                 +                         + LKT       +L 
Sbjct: 122 LRIKENKEVYEGEVTELSPEEAESTTSGYGKSISHVI--------IGLKTVKGTKQLKLD 173

Query: 186 GKMIEALGKEKVQSGDVVALDKASGKVTKLGRSIGRSRDYDAVGPHTKFVKCPEGELQKR 245
             + +AL KEKV  GDV+ ++  SG V ++GR    + +YD      ++V  P+GE+ K+
Sbjct: 174 PTIYDALIKEKVAVGDVIYIEANSGAVKRVGRCDSFATEYDLEA--EEYVPIPKGEVHKK 231

Query: 246 KEVVHCVTLHEIDVINSRTQG---FLALF----TGDTGEIRAEVREQIDTKVAEWREEGK 298
           KE+V  VTLH++D  N++ QG    L+L          EI  ++R++I+  V  + +EG 
Sbjct: 232 KEIVQDVTLHDLDAANAQPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRYIDEGI 291

Query: 299 AEIVPGVLFIDEVHMLDIECFSFLNRALENDMAPILVIATNRGITSIRGTNYRSPHGIPP 358
           AE+VPGVLFIDEVHMLDIECFS+LNRALE+ ++PI+++ATNRGI ++RGT+  SPHGIP 
Sbjct: 292 AELVPGVLFIDEVHMLDIECFSYLNRALESPLSPIVILATNRGICNVRGTDMTSPHGIPV 351

Query: 359 DFLDRLLIITTQPYTEDDIRKILDIRCDEEDVEMSADAKVLLTKIGVETSLRYAIHLITS 418
           D LDRL+II T+ Y   ++ +IL IR   E++E+  ++   L +IG +TSLR+AI L++ 
Sbjct: 352 DLLDRLVIIRTETYGPTEMIQILAIRAQVEEIEIDEESLAFLGEIGQQTSLRHAIQLLSP 411

Query: 419 AALACQKRKGKVVEMEDISRVYQLFLDVKRSTQYLMEYQSQYM 461
           A++  +    + +   D+  V  L+LD K S + L E Q +Y+
Sbjct: 412 ASVVAKANGREKISKADLEEVSGLYLDAKSSARLLQEQQERYI 454



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.135    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,352,529
Number of extensions: 526100
Number of successful extensions: 1633
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1630
Number of HSP's successfully gapped: 3
Length of query: 476
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 371
Effective length of database: 11,553,331
Effective search space: 4286285801
Effective search space used: 4286285801
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)