BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0186500 Os06g0186500|003-104-H08
         (171 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0186500  tRNA-binding arm domain containing protein          352   6e-98
Os07g0185700  Conserved hypothetical protein                      150   4e-37

>Os06g0186500 tRNA-binding arm domain containing protein
          Length = 171

 Score =  352 bits (904), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 171/171 (100%), Positives = 171/171 (100%)

Query: 1   DESIYLAYSDFHPYVVGDLACTKELNRWFSKQFEKGPFRLVAEEGKSKCSWVSLDDITNG 60
           DESIYLAYSDFHPYVVGDLACTKELNRWFSKQFEKGPFRLVAEEGKSKCSWVSLDDITNG
Sbjct: 1   DESIYLAYSDFHPYVVGDLACTKELNRWFSKQFEKGPFRLVAEEGKSKCSWVSLDDITNG 60

Query: 61  LIRGDSEKSHHHQRVAELQRLRSIFATSERQWIEAQVENAKQQAILSILKSQVSSDEAHI 120
           LIRGDSEKSHHHQRVAELQRLRSIFATSERQWIEAQVENAKQQAILSILKSQVSSDEAHI
Sbjct: 61  LIRGDSEKSHHHQRVAELQRLRSIFATSERQWIEAQVENAKQQAILSILKSQVSSDEAHI 120

Query: 121 HRDIHSLRRKGSELAGELSTLSQKVQAFVSEVCSTHVEALPFLAKYLHYIP 171
           HRDIHSLRRKGSELAGELSTLSQKVQAFVSEVCSTHVEALPFLAKYLHYIP
Sbjct: 121 HRDIHSLRRKGSELAGELSTLSQKVQAFVSEVCSTHVEALPFLAKYLHYIP 171



>Os07g0185700 Conserved hypothetical protein
          Length = 602

 Score =  150 bits (380), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 78/155 (50%), Positives = 107/155 (69%), Gaps = 17/155 (10%)

Query: 1   DESIYLAYSDFHPYVVGDLACTKELNRWFSKQFEKGPFRLVAEEGKSKCSWVSLDDITNG 60
           D  IYL+YSDF  Y++ +LAC KELNRWFSK+FEKGP + VA+E  S             
Sbjct: 195 DIGIYLSYSDFQSYIIQNLACIKELNRWFSKKFEKGPLQFVAKEDMS------------- 241

Query: 61  LIRGDSEKSHHHQRVAELQRLRSIFATSERQWIEAQVENAKQQAILSILKSQVSSDEAHI 120
             RGD E SHH     EL+R+ SIFA S+RQ+IEAQ E AK++AILS L++Q++S ++ +
Sbjct: 242 --RGDYEGSHHLS--VELKRINSIFARSKRQYIEAQAEYAKEEAILSTLRTQLASQQSLV 297

Query: 121 HRDIHSLRRKGSELAGELSTLSQKVQAFVSEVCST 155
           H+D+HSLRR+ SE A EL  LS +V+  +SE+ ++
Sbjct: 298 HQDVHSLRRRNSEFAEELRDLSLQVKRCLSEIITS 332



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.131    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,323,602
Number of extensions: 185937
Number of successful extensions: 603
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 602
Number of HSP's successfully gapped: 2
Length of query: 171
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 77
Effective length of database: 12,127,685
Effective search space: 933831745
Effective search space used: 933831745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 152 (63.2 bits)