Os06g0186500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : tRNA-binding arm domain containing protein.
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Os06g0186500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : tRNA-binding arm domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.77 | 0.224 | 11.1 | 0.08 | 0.393 | -0.367 | 0.223 | 0.342 | 0.0651 | 14.4 | 23.9 | 5328 | -- | -- |
| 22.76 | 0.222 | 11.1 | 0.185 | 0.393 | -0.356 | 0.24 | -- | 0.0783 | 14.4 | 23.54 | 6797 | -- | -- |
| 22.9 | 0.223 | 11.1 | 0.0963 | 0.386 | -0.355 | -- | 0.287 | 0.0677 | 14.4 | 23.57 | 5683 | -- | -- |
| 22.95 | 0.223 | 11.1 | 0.187 | 0.384 | -0.354 | -- | -- | 0.073 | 14.4 | 23.52 | 7576 | -- | -- |
| 27.31 | 0.245 | 11.1 | 0.243 | -- | -0.302 | -- | 0.248 | 0.156 | -- | 26.91 | 6140 | -- | -- |
| 27.19 | 0.244 | 11.1 | 0.37 | 0.367 | -- | 0.203 | -- | 0.22 | 14.5 | -- | -- | -- | -- |
| 27.33 | 0.245 | 11.1 | 0.375 | 0.367 | -- | -- | -- | 0.221 | 14.4 | -- | -- | -- | -- |
| 27.46 | 0.245 | 11.1 | 0.291 | -- | -0.293 | -- | -- | 0.169 | -- | 26.91 | 6140 | -- | -- |
| 23.42 | 0.225 | 11.1 | -- | 0.376 | -0.439 | -- | -- | 0.0319 | 14.4 | 22.33 | 8729 | -- | -- |
| 35.28 | 0.278 | 11.1 | 0.36 | -- | -- | -- | -- | 0.212 | -- | -- | -- | -- | -- |
| 31.05 | 0.261 | 11.1 | -- | 0.36 | -- | -- | -- | 0.179 | 14.4 | -- | -- | -- | -- |
| 29.56 | 0.254 | 11.1 | -- | -- | -0.31 | -- | -- | 0.12 | -- | 26.7 | 6094 | -- | -- |
| 38.69 | 0.29 | 11.1 | -- | -- | -- | -- | -- | 0.172 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.12 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 8 |
| 2 | 22.13 | wind | 3 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 5 | 22.19 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 7 |
| 8 | 22.20 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 2 |
| 9 | 22.20 | wind | 7 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 11 | 22.21 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 7 |
| 14 | 22.22 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 20 | 22.25 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 4 |
| 22 | 22.26 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 5 |
| 25 | 22.26 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 4 |
| 37 | 22.30 | radiation | 40 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 38 | 22.30 | radiation | 30 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 45 | 22.32 | radiation | 40 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 46 | 22.32 | wind | 5 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 65 | 22.35 | wind | 5 | 43200 | > th | dose independent | rect. | 16 | 6 |
| 69 | 22.36 | radiation | 10 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 112 | 22.40 | radiation | 20 | 43200 | < th | dose independent | rect. | 6 | 4 |
| 177 | 22.42 | wind | 5 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 179 | 22.42 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 12 |
| 231 | 22.44 | wind | 5 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 238 | 22.44 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 14 |
| 239 | 22.44 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 16 |
| 245 | 22.45 | wind | 5 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 247 | 22.45 | radiation | 40 | 43200 | > th | dose independent | rect. | 7 | 4 |
| 263 | 22.45 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 16 |
| 273 | 22.46 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 11 |
| 274 | 22.46 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 12 |
| 277 | 22.46 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 14 |
| 281 | 22.46 | wind | 5 | 43200 | > th | dose dependent | sin | 19 | NA |
| 311 | 22.47 | radiation | 40 | 43200 | > th | dose dependent | sin | 10 | NA |
| 316 | 22.48 | wind | 7 | 43200 | < th | dose independent | sin | 20 | NA |
| 317 | 22.48 | radiation | 20 | 43200 | < th | dose independent | sin | 10 | NA |
| 448 | 22.50 | radiation | 10 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 485 | 22.51 | radiation | 40 | 43200 | < th | dose independent | sin | 9 | NA |
| 510 | 22.52 | wind | 7 | 43200 | > th | dose independent | sin | 20 | NA |
| 587 | 22.53 | wind | 7 | 43200 | > th | dose dependent | rect. | 13 | 19 |
| 638 | 22.55 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 639 | 22.55 | radiation | 20 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 769 | 22.56 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 19 |
| 815 | 22.57 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 18 |
| 887 | 22.58 | radiation | 40 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 967 | 22.60 | radiation | 40 | 43200 | > th | dose independent | sin | 10 | NA |
| 984 | 22.60 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 19 |
| 985 | 22.60 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 19 |
| 989 | 22.60 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 21 |