BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0180800 Os06g0180800|014-012-H08
         (130 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0180800  Zinc finger, RING-type domain containing protein    177   2e-45
Os02g0798200  Zinc finger, RING-type domain containing protein     70   4e-13

>Os06g0180800 Zinc finger, RING-type domain containing protein
          Length = 130

 Score =  177 bits (448), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 92/130 (70%), Positives = 92/130 (70%)

Query: 1   SQRESVIKRHHSTGSIKLNRXXXXXXXXXXXXXXXXXXXVQREVYSRKGVXXXXXXXXXX 60
           SQRESVIKRHHSTGSIKLNR                   VQREVYSRKGV          
Sbjct: 1   SQRESVIKRHHSTGSIKLNRGATGGGGGGGRSTATAAMGVQREVYSRKGVMRRLMRWSRL 60

Query: 61  XXDAAEQAECAVCLDEFAAGDVLAHLPCGHRFHWACALPWLEAGAAPRSCPFCRAAVDTX 120
             DAAEQAECAVCLDEFAAGDVLAHLPCGHRFHWACALPWLEAGAAPRSCPFCRAAVDT 
Sbjct: 61  RWDAAEQAECAVCLDEFAAGDVLAHLPCGHRFHWACALPWLEAGAAPRSCPFCRAAVDTP 120

Query: 121 XXXXXXACSS 130
                 ACSS
Sbjct: 121 PPPPPPACSS 130



>Os02g0798200 Zinc finger, RING-type domain containing protein
          Length = 210

 Score = 70.1 bits (170), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 58/121 (47%), Gaps = 14/121 (11%)

Query: 1   SQRES---VIKRHHSTGSIKLNRXXXXXXXXXXXXXXXXXXXVQREVYSRK-GVXXXXXX 56
           SQRES   V+KRH+                             Q EVY+RK G       
Sbjct: 86  SQRESAVVVVKRHNKA-------QVAGTSSDGGEQSTATTAAPQWEVYTRKEGRRRMWFR 138

Query: 57  XXXXXXDAAEQAECAVCLDEFAAGDVLAHLPCGHRFHWACALPWLEAGAAPRSCPFCRAA 116
                    E+ ECAVCL+E  AG+ +AHLPC HRFHW CA+PW++  +    CP CRAA
Sbjct: 139 RLGRRPTPEEEEECAVCLEELRAGEAVAHLPCTHRFHWGCAVPWVQTAS---RCPVCRAA 195

Query: 117 V 117
           V
Sbjct: 196 V 196



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.131    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,264,518
Number of extensions: 98964
Number of successful extensions: 802
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 864
Number of HSP's successfully gapped: 3
Length of query: 130
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 41
Effective length of database: 12,388,755
Effective search space: 507938955
Effective search space used: 507938955
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 150 (62.4 bits)