Os06g0180800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os06g0180800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 205.6 | 0.674 | 9.35 | -1.49 | 1.28 | -4.88 | -0.956 | -6.75 | -0.255 | 14.5 | 1.076 | 1500 | -- | -- |
| 213.29 | 0.68 | 9.46 | -2.08 | 0.617 | -4.17 | -0.229 | -- | -0.425 | 15 | 2.28 | 1589 | -- | -- |
| 208.15 | 0.672 | 9.32 | -1.55 | 1.34 | -4.97 | -- | -7.04 | -0.232 | 14.4 | 0.8601 | 1492 | -- | -- |
| 213.47 | 0.68 | 9.46 | -2.06 | 0.621 | -4.14 | -- | -- | -0.416 | 15 | 2.269 | 1589 | -- | -- |
| 219.03 | 0.689 | 9.43 | -1.81 | -- | -4.99 | -- | -3.48 | -0.461 | -- | 1.462 | 1626 | -- | -- |
| 349.74 | 0.877 | 9.33 | -1.38 | 1.83 | -- | -0.361 | -- | 0.0811 | 13.7 | -- | -- | -- | -- |
| 350.25 | 0.876 | 9.33 | -1.39 | 1.83 | -- | -- | -- | 0.0789 | 13.7 | -- | -- | -- | -- |
| 216.65 | 0.686 | 9.46 | -2.07 | -- | -4.57 | -- | -- | -0.424 | -- | 2.22 | 1651 | -- | -- |
| 315.74 | 0.828 | 9.41 | -- | 0.862 | -3.15 | -- | -- | -0.164 | 14.5 | 3.538 | 1603 | -- | -- |
| 553.61 | 1.1 | 9.36 | -1.47 | -- | -- | -- | -- | 0.0381 | -- | -- | -- | -- | -- |
| 401.53 | 0.937 | 9.3 | -- | 1.85 | -- | -- | -- | 0.234 | 13.7 | -- | -- | -- | -- |
| 323.08 | 0.837 | 9.4 | -- | -- | -4.01 | -- | -- | -0.146 | -- | 2.692 | 1674 | -- | -- |
| 610.54 | 1.15 | 9.32 | -- | -- | -- | -- | -- | 0.201 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 206.78 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 14 |
| 2 | 209.57 | radiation | 1 | 1440 | < th | dose dependent | sin | 22 | NA |
| 4 | 210.01 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 19 |
| 12 | 210.51 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 9 |
| 22 | 210.58 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 13 |
| 23 | 210.58 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 15 |
| 29 | 210.60 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 16 |
| 50 | 210.73 | radiation | 1 | 1440 | < th | dose dependent | sin | 16 | NA |
| 101 | 212.91 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 16 |
| 103 | 212.93 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 19 |
| 113 | 213.04 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 123 | 213.66 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 19 |
| 154 | 213.86 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 165 | 213.90 | radiation | 1 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 196 | 215.61 | radiation | 1 | 1440 | < th | dose dependent | rect. | 16 | 23 |
| 215 | 217.70 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 216 | 217.73 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 230 | 218.72 | radiation | 1 | 1440 | > th | dose independent | rect. | 7 | 23 |
| 270 | 220.83 | radiation | 1 | 1440 | > th | dose independent | sin | 22 | NA |
| 275 | 221.38 | radiation | 1 | 1440 | > th | dose independent | sin | 15 | NA |
| 283 | 221.71 | radiation | 1 | 1440 | < th | dose independent | sin | 22 | NA |
| 291 | 222.12 | radiation | 1 | 1440 | < th | dose independent | sin | 14 | NA |
| 296 | 222.37 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 309 | 223.72 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 336 | 223.95 | radiation | 1 | 1440 | > th | dose independent | rect. | 7 | 12 |
| 377 | 224.43 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 16 |
| 385 | 224.51 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 413 | 224.62 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 19 |
| 415 | 224.62 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 22 |
| 428 | 224.69 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 14 |
| 449 | 224.75 | radiation | 1 | 1440 | < th | dose independent | rect. | 23 | 22 |
| 451 | 224.76 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 464 | 224.79 | radiation | 1 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 481 | 224.99 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 527 | 225.08 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 10 |
| 553 | 225.28 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 571 | 225.73 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 14 |
| 573 | 225.74 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 17 |
| 599 | 225.99 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 9 |
| 666 | 226.69 | radiation | 1 | 1440 | < th | dose independent | rect. | 16 | 23 |
| 675 | 227.06 | radiation | 1 | 1440 | > th | dose independent | rect. | 16 | 23 |
| 676 | 227.07 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 695 | 227.54 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 2 |
| 696 | 227.59 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 776 | 228.94 | temperature | 25 | 1440 | > th | dose dependent | sin | 17 | NA |
| 856 | 229.93 | humidity | 80 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 895 | 230.37 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 899 | 230.46 | radiation | 1 | 720 | < th | dose independent | rect. | 16 | 11 |
| 938 | 231.04 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 949 | 231.37 | humidity | 90 | 43200 | > th | dose independent | rect. | 14 | 10 |
| 957 | 231.54 | humidity | 80 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 1000 | 232.09 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 10 |