BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0177300 Os06g0177300|Os06g0177300
         (466 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0177300                                                      768   0.0  
Os06g0176150                                                      768   0.0  
Os02g0803200  Similar to 30S ribosomal protein S15                247   1e-65

>Os06g0177300 
          Length = 466

 Score =  768 bits (1982), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/454 (85%), Positives = 387/454 (85%)

Query: 1   MAXXXXXXXIHRGHKTLLPRAFSSSSGEGMFPPPTSDPASADQRTTKLSSHFAEIRGHLN 60
           MA       IHRGHKTLLPRAFSSSSGEGMFPPPTSDPASADQRTTKLSSHFAEIRGHLN
Sbjct: 1   MALLLLRRRIHRGHKTLLPRAFSSSSGEGMFPPPTSDPASADQRTTKLSSHFAEIRGHLN 60

Query: 61  ATXXXXXXXXXXXXXXXDDVRRSLHLFRNXXXXXXXXXXXXXXXXXXXXDVFRARPAPPT 120
           AT               DDVRRSLHLFRN                    DVFRARPAPPT
Sbjct: 61  ATPPSSPPRRIPESPPPDDVRRSLHLFRNPHPSSGATSAAAANPSPSFADVFRARPAPPT 120

Query: 121 SRATGADAFPFSALRESLNKNLGTSPTASAVPLPGATASSPDWSSILSSRQRHDGKPLPE 180
           SRATGADAFPFSALRESLNKNLGTSPTASAVPLPGATASSPDWSSILSSRQRHDGKPLPE
Sbjct: 121 SRATGADAFPFSALRESLNKNLGTSPTASAVPLPGATASSPDWSSILSSRQRHDGKPLPE 180

Query: 181 SVFXXXXXXXXXXXXXXKVEEQQFIRLYSDNELGKKLSELRPPVGKDGKEWFSVEELSRR 240
           SVF              KVEEQQFIRLYSDNELGKKLSELRPPVGKDGKEWFSVEELSRR
Sbjct: 181 SVFGRETRGEARRGRDGKVEEQQFIRLYSDNELGKKLSELRPPVGKDGKEWFSVEELSRR 240

Query: 241 LKKLREMDREERALQSGLGTDVLRDAIVTLQTKDLKTNNFAIGECLMKLMDNLFVTDDAV 300
           LKKLREMDREERALQSGLGTDVLRDAIVTLQTKDLKTNNFAIGECLMKLMDNLFVTDDAV
Sbjct: 241 LKKLREMDREERALQSGLGTDVLRDAIVTLQTKDLKTNNFAIGECLMKLMDNLFVTDDAV 300

Query: 301 VTFGLLVAAAQSMSALMAFGSQATPAYLLGKPQQELVERYFHPDHMSSAEKMKQELQSVR 360
           VTFGLLVAAAQSMSALMAFGSQATPAYLLGKPQQELVERYFHPDHMSSAEKMKQELQSVR
Sbjct: 301 VTFGLLVAAAQSMSALMAFGSQATPAYLLGKPQQELVERYFHPDHMSSAEKMKQELQSVR 360

Query: 361 DEFKMSENDCGSARVQVAQLTTKIKHLSTTLHKKDKHSRKGLQEMVQXXXXXXXXXXXTD 420
           DEFKMSENDCGSARVQVAQLTTKIKHLSTTLHKKDKHSRKGLQEMVQ           TD
Sbjct: 361 DEFKMSENDCGSARVQVAQLTTKIKHLSTTLHKKDKHSRKGLQEMVQRRKKYLKYLRRTD 420

Query: 421 WDSYCLVLSKLGLRDVPEYKPPDYKSKRSSSGKT 454
           WDSYCLVLSKLGLRDVPEYKPPDYKSKRSSSGKT
Sbjct: 421 WDSYCLVLSKLGLRDVPEYKPPDYKSKRSSSGKT 454



>Os06g0176150 
          Length = 466

 Score =  768 bits (1982), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/454 (85%), Positives = 387/454 (85%)

Query: 1   MAXXXXXXXIHRGHKTLLPRAFSSSSGEGMFPPPTSDPASADQRTTKLSSHFAEIRGHLN 60
           MA       IHRGHKTLLPRAFSSSSGEGMFPPPTSDPASADQRTTKLSSHFAEIRGHLN
Sbjct: 1   MALLLLRRRIHRGHKTLLPRAFSSSSGEGMFPPPTSDPASADQRTTKLSSHFAEIRGHLN 60

Query: 61  ATXXXXXXXXXXXXXXXDDVRRSLHLFRNXXXXXXXXXXXXXXXXXXXXDVFRARPAPPT 120
           AT               DDVRRSLHLFRN                    DVFRARPAPPT
Sbjct: 61  ATPPSSPPRRIPESPPPDDVRRSLHLFRNPHPSSGATSAAAANPSPSFADVFRARPAPPT 120

Query: 121 SRATGADAFPFSALRESLNKNLGTSPTASAVPLPGATASSPDWSSILSSRQRHDGKPLPE 180
           SRATGADAFPFSALRESLNKNLGTSPTASAVPLPGATASSPDWSSILSSRQRHDGKPLPE
Sbjct: 121 SRATGADAFPFSALRESLNKNLGTSPTASAVPLPGATASSPDWSSILSSRQRHDGKPLPE 180

Query: 181 SVFXXXXXXXXXXXXXXKVEEQQFIRLYSDNELGKKLSELRPPVGKDGKEWFSVEELSRR 240
           SVF              KVEEQQFIRLYSDNELGKKLSELRPPVGKDGKEWFSVEELSRR
Sbjct: 181 SVFGRETRGEARRGRDGKVEEQQFIRLYSDNELGKKLSELRPPVGKDGKEWFSVEELSRR 240

Query: 241 LKKLREMDREERALQSGLGTDVLRDAIVTLQTKDLKTNNFAIGECLMKLMDNLFVTDDAV 300
           LKKLREMDREERALQSGLGTDVLRDAIVTLQTKDLKTNNFAIGECLMKLMDNLFVTDDAV
Sbjct: 241 LKKLREMDREERALQSGLGTDVLRDAIVTLQTKDLKTNNFAIGECLMKLMDNLFVTDDAV 300

Query: 301 VTFGLLVAAAQSMSALMAFGSQATPAYLLGKPQQELVERYFHPDHMSSAEKMKQELQSVR 360
           VTFGLLVAAAQSMSALMAFGSQATPAYLLGKPQQELVERYFHPDHMSSAEKMKQELQSVR
Sbjct: 301 VTFGLLVAAAQSMSALMAFGSQATPAYLLGKPQQELVERYFHPDHMSSAEKMKQELQSVR 360

Query: 361 DEFKMSENDCGSARVQVAQLTTKIKHLSTTLHKKDKHSRKGLQEMVQXXXXXXXXXXXTD 420
           DEFKMSENDCGSARVQVAQLTTKIKHLSTTLHKKDKHSRKGLQEMVQ           TD
Sbjct: 361 DEFKMSENDCGSARVQVAQLTTKIKHLSTTLHKKDKHSRKGLQEMVQRRKKYLKYLRRTD 420

Query: 421 WDSYCLVLSKLGLRDVPEYKPPDYKSKRSSSGKT 454
           WDSYCLVLSKLGLRDVPEYKPPDYKSKRSSSGKT
Sbjct: 421 WDSYCLVLSKLGLRDVPEYKPPDYKSKRSSSGKT 454



>Os02g0803200 Similar to 30S ribosomal protein S15
          Length = 447

 Score =  247 bits (631), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 141/249 (56%), Positives = 158/249 (63%), Gaps = 29/249 (11%)

Query: 200 EEQQFIRL---YSDNELGKKLSELRPP-VGKDGKEWFSVEELSRRLKKLREMDREERALQ 255
           EE   I L   YS  ELGKKL +LRP   G DGKEWFS+EEL  R+ KL  +D  +  ++
Sbjct: 202 EENSAIELKKEYSYAELGKKLGQLRPSGAGNDGKEWFSLEELQGRIAKLANLDIAD-DMR 260

Query: 256 SGLGTDVLRDAIVTLQTKDLKTNNFAIGECLMKLMDNLFVTDDAVVTFGLLVAAAQSMSA 315
            G     LR +++ +Q  D KT                   DD   T  +     Q +S 
Sbjct: 261 LGGQYVALRKSLLGIQA-DQKTK------------------DDIKKTRSM-----QGLSF 296

Query: 316 LMAFGSQATPAYLLGKPQQELVERYFHPDHMSSAEKMKQELQSVRDEFKMSENDCGSARV 375
           L   G  ATP YL   PQ+EL+ERYFHPDHMSS EKMK ELQ VRDEFKMSENDCGSARV
Sbjct: 297 LANIGGPATPQYLQHPPQEELLERYFHPDHMSSEEKMKLELQRVRDEFKMSENDCGSARV 356

Query: 376 QVAQLTTKIKHLSTTLHKKDKHSRKGLQEMVQXXXXXXXXXXXTDWDSYCLVLSKLGLRD 435
           Q+AQLT KIKHLST LHKKDKHSRKGLQ+MVQ           TDWDSYCLVLSKLGLRD
Sbjct: 357 QIAQLTVKIKHLSTVLHKKDKHSRKGLQDMVQRRKKYLKYLRRTDWDSYCLVLSKLGLRD 416

Query: 436 VPEYKPPDY 444
           VPEYK PDY
Sbjct: 417 VPEYKAPDY 425



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.129    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,616,068
Number of extensions: 499458
Number of successful extensions: 2153
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2147
Number of HSP's successfully gapped: 3
Length of query: 466
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 362
Effective length of database: 11,605,545
Effective search space: 4201207290
Effective search space used: 4201207290
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)