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Os02g0803200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to 30S ribosomal protein S15.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.6 (0.0222) R2 : 0.59
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.44 (0.0566) R2dC : 0.584 R2C : 0.585
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0881 (0.0468) R2dN8 : 0.00413 R2N8 : 0.00512
σ : 0.419
deviance : 80.22
__
_____
C
peak time of C : 15.9
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
56.74 0.354 9.6 0.623 1.22 -0.846 0.622 0.282 -0.0268 17.5 44.7 10 -- --
57 0.352 9.6 0.613 1.21 -0.861 0.601 -- -0.0278 17.5 45.55 9 -- --
57.67 0.354 9.6 0.621 1.22 -0.828 -- 0.233 -0.024 17.4 45.83 9 -- --
57.84 0.354 9.6 0.613 1.22 -0.832 -- -- -0.024 17.4 46.24 9 -- --
73.05 0.398 9.59 0.48 -- -1.39 -- -0.326 -0.0828 -- 0.009991 495 -- --
69.37 0.39 9.59 0.632 1.45 -- 0.273 -- -0.0189 15.9 -- -- -- --
69.58 0.391 9.59 0.635 1.45 -- -- -- -0.0173 15.9 -- -- -- --
73.39 0.399 9.59 0.554 -- -1.38 -- -- -0.0865 -- 2.56 482 -- --
67.66 0.383 9.62 -- 1.2 -0.86 -- -- -0.0968 17.5 44.74 10 -- --
185.55 0.636 9.58 0.575 -- -- -- -- -0.0561 -- -- -- -- --
80.22 0.419 9.6 -- 1.44 -- -- -- -0.0881 15.9 -- -- -- --
79.82 0.416 9.59 -- -- -1.41 -- -- -0.108 -- 3.171e-06 495 -- --
194.28 0.651 9.6 -- -- -- -- -- -0.12 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 46.76 precipitation 0.1 270 < th dose independent rect. 3 2
2 46.76 precipitation 0.1 270 < th dose dependent rect. 3 2
3 46.82 wind 5.0 270 < th dose independent rect. 3 2
4 46.99 wind 5.0 90 < th dose independent rect. 3 5
5 47.09 wind 5.0 270 < th dose independent rect. 1 5
6 47.11 wind 9.0 270 < th dose independent rect. 5 22
7 47.28 precipitation 0.1 90 < th dose independent rect. 3 5
8 47.28 precipitation 0.1 90 < th dose dependent rect. 3 5
10 47.33 wind 9.0 90 < th dose dependent rect. 3 5
11 47.50 temperature 15.0 270 > th dose independent rect. 13 17
12 47.50 wind 9.0 270 < th dose dependent rect. 3 2
15 47.59 temperature 10.0 270 > th dose independent rect. 3 2
17 47.59 temperature 30.0 270 < th dose independent rect. 3 2
18 47.59 humidity 50.0 270 > th dose independent rect. 3 2
21 47.59 atmosphere 995.0 270 > th dose independent rect. 3 2
22 47.59 atmosphere 1010.0 270 < th dose independent rect. 3 2
24 47.59 radiation 20.0 270 < th dose independent rect. 3 2
27 47.59 temperature 10.0 270 > th dose independent rect. 5 22
28 47.60 radiation 30.0 270 < th dose dependent rect. 3 2
30 47.61 precipitation 0.1 270 < th dose independent rect. 1 5
31 47.61 wind 9.0 90 < th dose independent rect. 8 19
33 47.61 precipitation 0.1 270 < th dose dependent rect. 1 5
34 47.62 radiation 1.0 270 < th dose independent rect. 3 2
41 47.79 temperature 10.0 90 > th dose independent rect. 3 5
43 47.79 temperature 30.0 90 < th dose independent rect. 3 5
44 47.79 humidity 50.0 90 > th dose independent rect. 3 5
46 47.79 atmosphere 995.0 90 > th dose independent rect. 3 5
47 47.79 atmosphere 1015.0 90 < th dose independent rect. 3 5
48 47.79 temperature 10.0 90 > th dose independent rect. 8 19
49 47.80 wind 9.0 270 < th dose independent rect. 6 19
50 47.83 radiation 40.0 90 < th dose independent rect. 3 5
53 47.92 temperature 10.0 270 > th dose dependent rect. 3 2
56 48.03 radiation 40.0 90 < th dose dependent rect. 3 6
58 48.10 radiation 20.0 270 < th dose dependent rect. 1 6
62 48.16 atmosphere 1010.0 270 < th dose independent rect. 1 5
64 48.18 temperature 10.0 270 > th dose independent rect. 1 5
66 48.18 temperature 30.0 270 < th dose independent rect. 1 5
67 48.18 humidity 50.0 270 > th dose independent rect. 1 5
70 48.18 atmosphere 995.0 270 > th dose independent rect. 1 5
72 48.18 radiation 20.0 270 < th dose independent rect. 1 5
75 48.18 temperature 10.0 270 > th dose independent rect. 6 19
77 48.19 wind 9.0 270 < th dose dependent rect. 1 5
78 48.22 temperature 10.0 90 > th dose dependent rect. 3 5
79 48.23 radiation 40.0 90 < th dose dependent rect. 3 8
81 48.26 radiation 40.0 270 < th dose dependent rect. 1 5
98 48.47 humidity 50.0 270 > th dose dependent rect. 3 2
101 48.52 temperature 10.0 270 > th dose dependent rect. 1 5
107 48.60 radiation 10.0 270 < th dose dependent rect. 1 13
111 48.69 precipitation 0.1 90 < th dose independent rect. 8 19
114 48.69 precipitation 0.1 90 < th dose dependent rect. 8 19
145 48.82 wind 9.0 10 < th dose dependent rect. 3 6
152 48.87 precipitation 0.1 270 < th dose independent rect. 13 17
153 48.87 radiation 40.0 90 < th dose dependent rect. 3 14
154 48.87 precipitation 0.1 270 < th dose dependent rect. 13 17
167 48.95 humidity 50.0 270 > th dose independent rect. 6 7
198 49.01 precipitation 0.1 270 < th dose independent rect. 6 19
199 49.01 precipitation 0.1 270 < th dose dependent rect. 6 19
201 49.05 precipitation 0.1 10 < th dose independent rect. 3 6
203 49.05 precipitation 0.1 10 < th dose dependent rect. 3 6
211 49.16 wind 9.0 270 < th dose independent rect. 6 7
213 49.18 precipitation 0.1 270 < th dose independent rect. 6 7
214 49.18 precipitation 0.1 270 < th dose dependent rect. 6 7
215 49.21 temperature 10.0 270 > th dose independent rect. 6 7
216 49.21 atmosphere 995.0 270 > th dose independent rect. 6 7
217 49.21 atmosphere 1015.0 270 < th dose independent rect. 6 7
227 49.40 wind 5.0 10 < th dose independent rect. 3 6
228 49.40 humidity 50.0 90 > th dose dependent rect. 3 5
240 49.56 atmosphere 1015.0 270 < th dose dependent rect. 3 2
250 49.66 humidity 50.0 270 > th dose dependent rect. 1 5
252 49.67 radiation 20.0 90 < th dose independent rect. 3 8
255 49.69 wind 9.0 10 < th dose independent rect. 9 18
260 49.75 wind 9.0 270 < th dose independent rect. 13 17
264 49.76 atmosphere 995.0 90 > th dose independent rect. 8 19
274 49.81 wind 7.0 270 < th dose independent rect. 17 9
293 49.94 temperature 10.0 10 > th dose independent rect. 3 6
295 49.94 temperature 30.0 10 < th dose independent rect. 3 6
296 49.94 humidity 50.0 10 > th dose independent rect. 3 6
298 49.94 atmosphere 995.0 10 > th dose independent rect. 3 6
299 49.94 atmosphere 1015.0 10 < th dose independent rect. 3 6
301 49.94 temperature 15.0 270 > th dose independent rect. 11 10
302 49.94 temperature 10.0 10 > th dose independent rect. 9 18
307 49.97 precipitation 0.1 270 < th dose independent rect. 5 22
308 49.97 precipitation 0.1 270 < th dose dependent rect. 5 22
309 50.00 atmosphere 1010.0 270 < th dose independent rect. 13 17
314 50.02 precipitation 0.1 10 < th dose independent rect. 9 18
316 50.02 precipitation 0.1 10 < th dose dependent rect. 9 18
324 50.07 radiation 40.0 90 < th dose independent rect. 3 16
328 50.08 precipitation 0.1 270 < th dose independent rect. 2 15
329 50.08 precipitation 0.1 270 < th dose dependent rect. 2 15
364 50.20 radiation 40.0 10 < th dose independent rect. 3 6
367 50.20 atmosphere 995.0 270 > th dose independent rect. 13 17
394 50.27 radiation 40.0 90 < th dose dependent rect. 3 12
398 50.28 radiation 40.0 270 < th dose independent rect. 13 17
399 50.29 temperature 10.0 10 > th dose dependent rect. 3 5
417 50.35 radiation 1.0 270 > th dose independent rect. 6 7
423 50.38 radiation 30.0 90 < th dose dependent rect. 3 10
447 50.45 atmosphere 995.0 270 > th dose independent rect. 6 19
461 50.51 radiation 40.0 270 < th dose dependent rect. 1 16
499 50.59 humidity 50.0 270 > th dose independent rect. 20 15
526 50.69 temperature 10.0 270 > th dose independent rect. 17 9
527 50.69 radiation 20.0 270 < th dose independent rect. 17 9
530 50.69 temperature 10.0 270 > th dose independent rect. 2 15
532 50.69 atmosphere 1015.0 270 < th dose independent rect. 2 15
541 50.72 atmosphere 1015.0 270 < th dose independent rect. 11 10
544 50.72 radiation 40.0 270 < th dose dependent rect. 17 9
567 50.76 precipitation 0.1 270 < th dose independent rect. 11 9
574 50.76 precipitation 0.1 270 < th dose dependent rect. 11 9
583 50.78 wind 9.0 270 < th dose independent rect. 20 15
599 50.81 temperature 10.0 270 > th dose independent rect. 20 15
600 50.81 atmosphere 995.0 270 > th dose independent rect. 20 15
611 50.85 atmosphere 1015.0 90 < th dose dependent rect. 3 5
631 50.88 wind 1.0 270 > th dose independent rect. 11 9
654 50.94 wind 1.0 270 > th dose independent rect. 1 5
680 50.99 wind 1.0 270 > th dose independent rect. 3 1
709 51.06 radiation 40.0 10 < th dose dependent rect. 4 18
734 51.09 wind 1.0 270 > th dose independent rect. 2 3
752 51.14 wind 9.0 270 < th dose dependent rect. 6 19
753 51.14 wind 9.0 90 < th dose dependent rect. 8 19
767 51.20 humidity 50.0 270 > th dose independent rect. 17 9
778 51.22 radiation 10.0 270 < th dose dependent sin 5 NA
794 51.26 wind 9.0 270 < th dose independent rect. 2 15
800 51.27 humidity 50.0 270 > th dose dependent rect. 18 7
815 51.28 humidity 50.0 90 > th dose independent rect. 8 19
820 51.30 atmosphere 995.0 270 > th dose independent rect. 17 9
828 51.32 temperature 15.0 10 > th dose independent rect. 14 19
833 51.34 radiation 40.0 10 < th dose independent rect. 4 16
848 51.37 radiation 40.0 10 < th dose dependent rect. 4 16
876 51.46 atmosphere 995.0 270 > th dose independent rect. 2 15
885 51.48 radiation 40.0 10 < th dose independent rect. 4 18
912 51.52 precipitation 0.1 270 < th dose independent rect. 17 9
918 51.52 precipitation 0.1 270 < th dose dependent rect. 17 9
922 51.54 precipitation 0.1 270 < th dose independent rect. 20 15
924 51.54 precipitation 0.1 270 < th dose dependent rect. 20 15
941 51.59 radiation 20.0 90 < th dose independent rect. 3 14
946 51.60 atmosphere 995.0 10 > th dose independent rect. 9 18
973 51.64 temperature 10.0 1440 > th dose independent rect. 4 6
976 51.64 atmosphere 995.0 1440 > th dose independent rect. 4 6
977 51.64 atmosphere 1015.0 1440 < th dose independent rect. 4 6
979 51.64 temperature 10.0 1440 > th dose independent rect. 10 18
983 51.64 wind 9.0 270 < th dose dependent rect. 6 7