BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0803200 Os02g0803200|AK063404
(447 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G15810.1 | chr1:5444496-5446271 FORWARD LENGTH=420 215 5e-56
AT1G80620.1 | chr1:30305404-30307182 FORWARD LENGTH=415 199 2e-51
>AT1G15810.1 | chr1:5444496-5446271 FORWARD LENGTH=420
Length = 419
Score = 215 bits (547), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 114/237 (48%), Positives = 152/237 (64%), Gaps = 11/237 (4%)
Query: 186 IFGRELGENARKAEGKEENSAIELKKEYSYAELGKKLGQLRPSGAGNDGKEWFSLEELQG 245
+F ++ E ++ +EG+ E + E Y+ ELG+KL LRP G +G WFSLEEL
Sbjct: 194 LFETQMDE-SKGSEGETEEAMTEFLMFYNEEELGEKLRTLRPEGEKKEG--WFSLEELNQ 250
Query: 246 RIAKLANLDIADDMRLGGQYVALRKSLLGIQADQKTKDDIKKTRSMQGLSFLANIGGPAT 305
R+ KL ++ + + LR + K++ + S Q ++ + ++GG
Sbjct: 251 RLVKLRQVEEKEAQYRTKNFAQLRNVISSF------KNENSEASSQQNVAIMGHLGG--I 302
Query: 306 PQYLQHPPQEELLERYFHPDHMSSEEKMKLELQRVRDEFKMSENDCGSARVQIAQLTVKI 365
P+Y PP+E+L++ YFHPD+MSS EKMK+EL +VR+EFKMSE+DCGSARVQ+AQLT KI
Sbjct: 303 PEYKLLPPKEDLVDTYFHPDNMSSAEKMKIELSKVREEFKMSESDCGSARVQVAQLTTKI 362
Query: 366 KHLSTVLHKKDKHSRKGLQDMVQXXXXXXXXXXXTDWDSYCLVLSKLGLRDVPEYKA 422
KHLS+ LHKKDKHSRKGL MVQ TDWDSYCLVLSKL LRD P+YK
Sbjct: 363 KHLSSSLHKKDKHSRKGLLGMVQKRKKLLKYLRRTDWDSYCLVLSKLSLRDNPDYKC 419
>AT1G80620.1 | chr1:30305404-30307182 FORWARD LENGTH=415
Length = 414
Score = 199 bits (506), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 107/214 (50%), Positives = 138/214 (64%), Gaps = 7/214 (3%)
Query: 208 ELKKEYSYAELGKKLGQLRPSGAGNDGKEWFSLEELQGRIAKLANLDIADDMRLGGQYVA 267
E K Y ELG+KL RP G +G WFSL+EL R+ KL ++ + + +
Sbjct: 207 EFIKSYDPIELGEKLRLYRPEGKKEEG--WFSLQELNQRLVKLRAMEEEQFQKTSIVHPS 264
Query: 268 LRKSLLGIQADQKTKDDIKKTRSMQGLSFLANIGGPATPQYLQHPPQEELLERYFHPDHM 327
+L +++ +K+ Q + + G TP+Y+ PP+++L+E YFHPD+M
Sbjct: 265 FVNNL---RSEFHKFTKAQKSDPFQNTNIWGVLSG--TPKYMLEPPKDQLVETYFHPDNM 319
Query: 328 SSEEKMKLELQRVRDEFKMSENDCGSARVQIAQLTVKIKHLSTVLHKKDKHSRKGLQDMV 387
SS EKMK+EL +VR+EFKMSE+DCGSARVQ+AQLT KIKHLS+VLHKKDKHSRKGL MV
Sbjct: 320 SSAEKMKIELAKVREEFKMSESDCGSARVQVAQLTTKIKHLSSVLHKKDKHSRKGLIAMV 379
Query: 388 QXXXXXXXXXXXTDWDSYCLVLSKLGLRDVPEYK 421
Q TDWDSYCL LSKLGLRD P+YK
Sbjct: 380 QRRKKLLKYMRRTDWDSYCLSLSKLGLRDNPDYK 413
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.131 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,021,123
Number of extensions: 316775
Number of successful extensions: 1021
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1017
Number of HSP's successfully gapped: 2
Length of query: 447
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 345
Effective length of database: 8,310,137
Effective search space: 2866997265
Effective search space used: 2866997265
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 113 (48.1 bits)