BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0803200 Os02g0803200|AK063404
(447 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0803200 Similar to 30S ribosomal protein S15 680 0.0
Os06g0177300 255 4e-68
Os06g0176150 255 4e-68
>Os02g0803200 Similar to 30S ribosomal protein S15
Length = 447
Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/425 (81%), Positives = 348/425 (81%)
Query: 1 MALRRINLRKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPSEGEGRNPAASLF 60
MALRRINLRKK KPSEGEGRNPAASLF
Sbjct: 1 MALRRINLRKKPLLLFPRPFSSSSSPNPPFPPPPPPPNDRDDASPKPSEGEGRNPAASLF 60
Query: 61 QDLRDRLMSTPSHLPSRRIPTAPPPRPSGNAEPVASIDDIRRQLESYXXXXXXXXXXXXX 120
QDLRDRLMSTPSHLPSRRIPTAPPPRPSGNAEPVASIDDIRRQLESY
Sbjct: 61 QDLRDRLMSTPSHLPSRRIPTAPPPRPSGNAEPVASIDDIRRQLESYRGSLAARGAPPGS 120
Query: 121 XXXXXXXXXLDLVRSTSSPTSPQGPNSGHFSSLAESLRNLPSGXXXXXXXXXXSTTPFLS 180
LDLVRSTSSPTSPQGPNSGHFSSLAESLRNLPSG STTPFLS
Sbjct: 121 SPDGAAPSLLDLVRSTSSPTSPQGPNSGHFSSLAESLRNLPSGRQPQQRRQPRSTTPFLS 180
Query: 181 PTAHPIFGRELGENARKAEGKEENSAIELKKEYSYAELGKKLGQLRPSGAGNDGKEWFSL 240
PTAHPIFGRELGENARKAEGKEENSAIELKKEYSYAELGKKLGQLRPSGAGNDGKEWFSL
Sbjct: 181 PTAHPIFGRELGENARKAEGKEENSAIELKKEYSYAELGKKLGQLRPSGAGNDGKEWFSL 240
Query: 241 EELQGRIAKLANLDIADDMRLGGQYVALRKSLLGIQADQKTKDDIKKTRSMQGLSFLANI 300
EELQGRIAKLANLDIADDMRLGGQYVALRKSLLGIQADQKTKDDIKKTRSMQGLSFLANI
Sbjct: 241 EELQGRIAKLANLDIADDMRLGGQYVALRKSLLGIQADQKTKDDIKKTRSMQGLSFLANI 300
Query: 301 GGPATPQYLQHPPQEELLERYFHPDHMSSEEKMKLELQRVRDEFKMSENDCGSARVQIAQ 360
GGPATPQYLQHPPQEELLERYFHPDHMSSEEKMKLELQRVRDEFKMSENDCGSARVQIAQ
Sbjct: 301 GGPATPQYLQHPPQEELLERYFHPDHMSSEEKMKLELQRVRDEFKMSENDCGSARVQIAQ 360
Query: 361 LTVKIKHLSTVLHKKDKHSRKGLQDMVQXXXXXXXXXXXTDWDSYCLVLSKLGLRDVPEY 420
LTVKIKHLSTVLHKKDKHSRKGLQDMVQ TDWDSYCLVLSKLGLRDVPEY
Sbjct: 361 LTVKIKHLSTVLHKKDKHSRKGLQDMVQRRKKYLKYLRRTDWDSYCLVLSKLGLRDVPEY 420
Query: 421 KAPDY 425
KAPDY
Sbjct: 421 KAPDY 425
>Os06g0177300
Length = 466
Score = 255 bits (652), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 151/272 (55%), Positives = 170/272 (62%), Gaps = 31/272 (11%)
Query: 181 PTAHPIFGREL-GENARKAEGK-EENSAIELKKEYSYAELGKKLGQLRPSGAGNDGKEWF 238
P +FGRE GE R +GK EE I L YS ELGKKL +LRP G DGKEWF
Sbjct: 177 PLPESVFGRETRGEARRGRDGKVEEQQFIRL---YSDNELGKKLSELRPP-VGKDGKEWF 232
Query: 239 SLEELQGRIAKLANLDIAD-DMRLGGQYVALRKSLLGIQA-DQKTK-------------- 282
S+EEL R+ KL +D + ++ G LR +++ +Q D KT
Sbjct: 233 SVEELSRRLKKLREMDREERALQSGLGTDVLRDAIVTLQTKDLKTNNFAIGECLMKLMDN 292
Query: 283 ----DDIKKTRSM-----QGLSFLANIGGPATPQYLQHPPQEELLERYFHPDHMSSEEKM 333
DD T + Q +S L G ATP YL PQ+EL+ERYFHPDHMSS EKM
Sbjct: 293 LFVTDDAVVTFGLLVAAAQSMSALMAFGSQATPAYLLGKPQQELVERYFHPDHMSSAEKM 352
Query: 334 KLELQRVRDEFKMSENDCGSARVQIAQLTVKIKHLSTVLHKKDKHSRKGLQDMVQXXXXX 393
K ELQ VRDEFKMSENDCGSARVQ+AQLT KIKHLST LHKKDKHSRKGLQ+MVQ
Sbjct: 353 KQELQSVRDEFKMSENDCGSARVQVAQLTTKIKHLSTTLHKKDKHSRKGLQEMVQRRKKY 412
Query: 394 XXXXXXTDWDSYCLVLSKLGLRDVPEYKAPDY 425
TDWDSYCLVLSKLGLRDVPEYK PDY
Sbjct: 413 LKYLRRTDWDSYCLVLSKLGLRDVPEYKPPDY 444
>Os06g0176150
Length = 466
Score = 255 bits (652), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 151/272 (55%), Positives = 170/272 (62%), Gaps = 31/272 (11%)
Query: 181 PTAHPIFGREL-GENARKAEGK-EENSAIELKKEYSYAELGKKLGQLRPSGAGNDGKEWF 238
P +FGRE GE R +GK EE I L YS ELGKKL +LRP G DGKEWF
Sbjct: 177 PLPESVFGRETRGEARRGRDGKVEEQQFIRL---YSDNELGKKLSELRPP-VGKDGKEWF 232
Query: 239 SLEELQGRIAKLANLDIAD-DMRLGGQYVALRKSLLGIQA-DQKTK-------------- 282
S+EEL R+ KL +D + ++ G LR +++ +Q D KT
Sbjct: 233 SVEELSRRLKKLREMDREERALQSGLGTDVLRDAIVTLQTKDLKTNNFAIGECLMKLMDN 292
Query: 283 ----DDIKKTRSM-----QGLSFLANIGGPATPQYLQHPPQEELLERYFHPDHMSSEEKM 333
DD T + Q +S L G ATP YL PQ+EL+ERYFHPDHMSS EKM
Sbjct: 293 LFVTDDAVVTFGLLVAAAQSMSALMAFGSQATPAYLLGKPQQELVERYFHPDHMSSAEKM 352
Query: 334 KLELQRVRDEFKMSENDCGSARVQIAQLTVKIKHLSTVLHKKDKHSRKGLQDMVQXXXXX 393
K ELQ VRDEFKMSENDCGSARVQ+AQLT KIKHLST LHKKDKHSRKGLQ+MVQ
Sbjct: 353 KQELQSVRDEFKMSENDCGSARVQVAQLTTKIKHLSTTLHKKDKHSRKGLQEMVQRRKKY 412
Query: 394 XXXXXXTDWDSYCLVLSKLGLRDVPEYKAPDY 425
TDWDSYCLVLSKLGLRDVPEYK PDY
Sbjct: 413 LKYLRRTDWDSYCLVLSKLGLRDVPEYKPPDY 444
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.131 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,163,740
Number of extensions: 549286
Number of successful extensions: 2118
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2110
Number of HSP's successfully gapped: 3
Length of query: 447
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 343
Effective length of database: 11,605,545
Effective search space: 3980701935
Effective search space used: 3980701935
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 158 (65.5 bits)