Os06g0177300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os06g0177300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.95 | 0.282 | 9.91 | -1.16 | 0.504 | -1.36 | 0.319 | 2.59 | -1.3 | 10 | 30.2 | 1321 | -- | -- |
| 40.85 | 0.3 | 9.84 | -0.524 | 0.608 | -1.57 | -0.109 | -- | -1.15 | 5.37 | 30.2 | 1321 | -- | -- |
| 36.05 | 0.28 | 9.9 | -1.15 | 0.577 | -1.4 | -- | 2.68 | -1.29 | 10.1 | 30.54 | 1173 | -- | -- |
| 40.88 | 0.3 | 9.84 | -0.523 | 0.607 | -1.57 | -- | -- | -1.15 | 5.4 | 30.2 | 1321 | -- | -- |
| 49.76 | 0.329 | 9.92 | -1.17 | -- | -1.33 | -- | 2.59 | -1.3 | -- | 29.91 | 1485 | -- | -- |
| 73.27 | 0.401 | 9.77 | -0.168 | 0.467 | -- | 0.323 | -- | -0.85 | 9.35 | -- | -- | -- | -- |
| 73.63 | 0.402 | 9.77 | -0.157 | 0.468 | -- | -- | -- | -0.85 | 9.19 | -- | -- | -- | -- |
| 54.93 | 0.345 | 9.87 | -0.578 | -- | -1.66 | -- | -- | -1.16 | -- | 23.69 | 1455 | -- | -- |
| 46.96 | 0.319 | 9.81 | -- | 0.603 | -1.6 | -- | -- | -1.02 | 6.08 | 61.61 | 48 | -- | -- |
| 86.34 | 0.434 | 9.78 | -0.158 | -- | -- | -- | -- | -0.848 | -- | -- | -- | -- | -- |
| 74.28 | 0.403 | 9.77 | -- | 0.468 | -- | -- | -- | -0.833 | 9.22 | -- | -- | -- | -- |
| 61.47 | 0.366 | 9.83 | -- | -- | -1.11 | -- | -- | -1.04 | -- | 26.78 | 1495 | -- | -- |
| 87 | 0.435 | 9.78 | -- | -- | -- | -- | -- | -0.831 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.87 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 2 |
| 5 | 34.90 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 5 |
| 7 | 34.95 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 8 |
| 9 | 34.97 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 3 |
| 78 | 35.40 | temperature | 10 | 1440 | > th | dose dependent | sin | 12 | NA |
| 80 | 35.40 | temperature | 30 | 1440 | < th | dose dependent | sin | 13 | NA |
| 156 | 35.71 | temperature | 10 | 1440 | > th | dose dependent | rect. | 19 | 17 |
| 158 | 35.71 | temperature | 15 | 1440 | > th | dose dependent | rect. | 19 | 19 |
| 159 | 35.71 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 19 |
| 176 | 35.74 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 202 | 35.78 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 17 |
| 381 | 36.01 | temperature | 30 | 1440 | < th | dose dependent | rect. | 9 | 21 |
| 466 | 36.12 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 471 | 36.12 | temperature | 15 | 1440 | > th | dose dependent | rect. | 9 | 21 |
| 580 | 36.25 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 582 | 36.25 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 583 | 36.26 | temperature | 15 | 1440 | > th | dose dependent | no | NA | NA |
| 669 | 36.39 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 23 |