BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0177300 Os06g0177300|Os06g0177300
(466 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G15810.1 | chr1:5444496-5446271 FORWARD LENGTH=420 204 7e-53
AT1G80620.1 | chr1:30305404-30307182 FORWARD LENGTH=415 196 3e-50
>AT1G15810.1 | chr1:5444496-5446271 FORWARD LENGTH=420
Length = 419
Score = 204 bits (520), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 121/275 (44%), Positives = 162/275 (58%), Gaps = 34/275 (12%)
Query: 166 ILSSRQRHDGKPLPESVFXXXXXXXXXXXXXXKVEEQQFIRLYSDNELGKKLSELRPPVG 225
+L S + G+ LP+ +F + +F+ Y++ ELG+KL LRP G
Sbjct: 178 VLGSFKSTVGEALPKYLFETQMDESKGSEGETEEAMTEFLMFYNEEELGEKLRTLRPE-G 236
Query: 226 KDGKEWFSVEELSRRLKKLREMDREERALQSGLGTDVLRDAIVTLQTKDLKTNNFAIGEC 285
+ + WFS+EEL++RL KLR+++ +E +T NFA
Sbjct: 237 EKKEGWFSLEELNQRLVKLRQVEEKE---------------------AQYRTKNFA---- 271
Query: 286 LMKLMDNLFVTDDAVVTFGLLVAAAQSMSALMAFGSQATPAYLLGKPQQELVERYFHPDH 345
++ + + F +++ A++Q A+M P Y L P+++LV+ YFHPD+
Sbjct: 272 QLRNVISSFKNENSE-------ASSQQNVAIMGHLG-GIPEYKLLPPKEDLVDTYFHPDN 323
Query: 346 MSSAEKMKQELQSVRDEFKMSENDCGSARVQVAQLTTKIKHLSTTLHKKDKHSRKGLQEM 405
MSSAEKMK EL VR+EFKMSE+DCGSARVQVAQLTTKIKHLS++LHKKDKHSRKGL M
Sbjct: 324 MSSAEKMKIELSKVREEFKMSESDCGSARVQVAQLTTKIKHLSSSLHKKDKHSRKGLLGM 383
Query: 406 VQXXXXXXXXXXXTDWDSYCLVLSKLGLRDVPEYK 440
VQ TDWDSYCLVLSKL LRD P+YK
Sbjct: 384 VQKRKKLLKYLRRTDWDSYCLVLSKLSLRDNPDYK 418
>AT1G80620.1 | chr1:30305404-30307182 FORWARD LENGTH=415
Length = 414
Score = 196 bits (497), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 116/240 (48%), Positives = 141/240 (58%), Gaps = 35/240 (14%)
Query: 203 QFIRLYSDNELGKKLSELRPPVGKDGKEWFSVEELSRRLKKLREMDREERALQSGLGTDV 262
+FI+ Y ELG+KL RP GK + WFS++EL++RL KLR M+ E+ S +
Sbjct: 207 EFIKSYDPIELGEKLRLYRPE-GKKEEGWFSLQELNQRLVKLRAMEEEQFQKTSIVHPSF 265
Query: 263 LRDAIVTLQ--TKDLKTNNFAIGECLMKLMDNLFVTDDAVVTFGLLVAAAQSMSALMAFG 320
+ + TK K++ F +G+L
Sbjct: 266 VNNLRSEFHKFTKAQKSDPF-----------------QNTNIWGVL-------------- 294
Query: 321 SQATPAYLLGKPQQELVERYFHPDHMSSAEKMKQELQSVRDEFKMSENDCGSARVQVAQL 380
TP Y+L P+ +LVE YFHPD+MSSAEKMK EL VR+EFKMSE+DCGSARVQVAQL
Sbjct: 295 -SGTPKYMLEPPKDQLVETYFHPDNMSSAEKMKIELAKVREEFKMSESDCGSARVQVAQL 353
Query: 381 TTKIKHLSTTLHKKDKHSRKGLQEMVQXXXXXXXXXXXTDWDSYCLVLSKLGLRDVPEYK 440
TTKIKHLS+ LHKKDKHSRKGL MVQ TDWDSYCL LSKLGLRD P+YK
Sbjct: 354 TTKIKHLSSVLHKKDKHSRKGLIAMVQRRKKLLKYMRRTDWDSYCLSLSKLGLRDNPDYK 413
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.129 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,392,763
Number of extensions: 300808
Number of successful extensions: 1139
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1138
Number of HSP's successfully gapped: 3
Length of query: 466
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 364
Effective length of database: 8,310,137
Effective search space: 3024889868
Effective search space used: 3024889868
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)