BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0177000 Os06g0177000|Os06g0177000
         (118 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0177000  Similar to Ubiquinol-cytochrome c reductase co...   241   9e-65
Os06g0175900  Similar to Ubiquinol-cytochrome c reductase co...    71   2e-13

>Os06g0177000 Similar to Ubiquinol-cytochrome c reductase complex
           ubiquinone-binding protein QP-C (EC 1.10.2.2)
           (Ubiquinol-cytochrome c reductase complex 8.2 kDa
           protein)
          Length = 118

 Score =  241 bits (615), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 118/118 (100%), Positives = 118/118 (100%)

Query: 1   MGKTPVRMKAVVYALSPFQQKVMPGLWKDITTKIHHKVSENWISATLLLAPIVGTYDNTV 60
           MGKTPVRMKAVVYALSPFQQKVMPGLWKDITTKIHHKVSENWISATLLLAPIVGTYDNTV
Sbjct: 1   MGKTPVRMKAVVYALSPFQQKVMPGLWKDITTKIHHKVSENWISATLLLAPIVGTYDNTV 60

Query: 61  SLTLMTISFLDSITNNITWSILMAMQVRNVLQGAGEAIPQILNVKHAEIATTFGIFMI 118
           SLTLMTISFLDSITNNITWSILMAMQVRNVLQGAGEAIPQILNVKHAEIATTFGIFMI
Sbjct: 61  SLTLMTISFLDSITNNITWSILMAMQVRNVLQGAGEAIPQILNVKHAEIATTFGIFMI 118



>Os06g0175900 Similar to Ubiquinol-cytochrome c reductase complex
           ubiquinone-binding protein QP-C (EC 1.10.2.2)
           (Ubiquinol-cytochrome c reductase complex 8.2 kDa
           protein)
          Length = 111

 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 32/34 (94%), Positives = 34/34 (100%)

Query: 85  MQVRNVLQGAGEAIPQILNVKHAEIATTFGIFMI 118
           ++VRNVLQGAGEAIPQILNVKHAEIATTFGIFMI
Sbjct: 78  LRVRNVLQGAGEAIPQILNVKHAEIATTFGIFMI 111



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,417,269
Number of extensions: 104033
Number of successful extensions: 181
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 2
Length of query: 118
Length of database: 17,035,801
Length adjustment: 85
Effective length of query: 33
Effective length of database: 12,597,611
Effective search space: 415721163
Effective search space used: 415721163
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 149 (62.0 bits)