BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0175900 Os06g0175900|AK120341
         (111 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0175900  Similar to Ubiquinol-cytochrome c reductase co...   108   1e-24
Os06g0177000  Similar to Ubiquinol-cytochrome c reductase co...    64   2e-11

>Os06g0175900 Similar to Ubiquinol-cytochrome c reductase complex
           ubiquinone-binding protein QP-C (EC 1.10.2.2)
           (Ubiquinol-cytochrome c reductase complex 8.2 kDa
           protein)
          Length = 111

 Score =  108 bits (269), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 63/111 (56%), Positives = 63/111 (56%)

Query: 1   SEASAPEHTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAEGDAGAVEGHHHQDPPQG 60
           SEASAPEHTT                              PAEGDAGAVEGHHHQDPPQG
Sbjct: 1   SEASAPEHTTEAAAAAAREGEEDGEDAGADEGGGVRAVAVPAEGDAGAVEGHHHQDPPQG 60

Query: 61  LREXXXXXXXXXXXXXXXXXXNVLQGAGEAIPQILNVKHAEIATTFGIFMI 111
           LRE                  NVLQGAGEAIPQILNVKHAEIATTFGIFMI
Sbjct: 61  LRELDLRHAPPRPHRRHLRVRNVLQGAGEAIPQILNVKHAEIATTFGIFMI 111



>Os06g0177000 Similar to Ubiquinol-cytochrome c reductase complex
           ubiquinone-binding protein QP-C (EC 1.10.2.2)
           (Ubiquinol-cytochrome c reductase complex 8.2 kDa
           protein)
          Length = 118

 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/30 (100%), Positives = 30/30 (100%)

Query: 82  NVLQGAGEAIPQILNVKHAEIATTFGIFMI 111
           NVLQGAGEAIPQILNVKHAEIATTFGIFMI
Sbjct: 89  NVLQGAGEAIPQILNVKHAEIATTFGIFMI 118



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.131    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,418,862
Number of extensions: 46908
Number of successful extensions: 77
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 2
Length of query: 111
Length of database: 17,035,801
Length adjustment: 78
Effective length of query: 33
Effective length of database: 12,963,109
Effective search space: 427782597
Effective search space used: 427782597
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 149 (62.0 bits)