BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0171700 Os06g0171700|AK103771
         (195 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0171700  Cdk-activating kinase assembly factor (MAT1) f...   372   e-103
Os11g0473100  Cdk-activating kinase assembly factor (MAT1) f...   304   2e-83

>Os06g0171700 Cdk-activating kinase assembly factor (MAT1) family protein
          Length = 195

 Score =  372 bits (954), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 182/195 (93%), Positives = 182/195 (93%)

Query: 1   MVVASGGGRNAWAKEMTIRRRITSIFNKTREHFPSLKDYNDYLEEVEDMTFNLIEGIDVE 60
           MVVASGGGRNAWAKEMTIRRRITSIFNKTREHFPSLKDYNDYLEEVEDMTFNLIEGIDVE
Sbjct: 1   MVVASGGGRNAWAKEMTIRRRITSIFNKTREHFPSLKDYNDYLEEVEDMTFNLIEGIDVE 60

Query: 61  VIEAKIARYQQENAEQIYLSRAKRAEDLAAALKASRMNPGKAGANDTXXXXXXXXXXXXX 120
           VIEAKIARYQQENAEQIYLSRAKRAEDLAAALKASRMNPGKAGANDT             
Sbjct: 61  VIEAKIARYQQENAEQIYLSRAKRAEDLAAALKASRMNPGKAGANDTAAGSSQGISSGAG 120

Query: 121 VQEGQYAPAAVPGGLAQPRPTGMAPQPIGGSSVPLQGDDEETMRLRAESGARAGGWSIEM 180
           VQEGQYAPAAVPGGLAQPRPTGMAPQPIGGSSVPLQGDDEETMRLRAESGARAGGWSIEM
Sbjct: 121 VQEGQYAPAAVPGGLAQPRPTGMAPQPIGGSSVPLQGDDEETMRLRAESGARAGGWSIEM 180

Query: 181 CKRRALQEAFSTIFV 195
           CKRRALQEAFSTIFV
Sbjct: 181 CKRRALQEAFSTIFV 195



>Os11g0473100 Cdk-activating kinase assembly factor (MAT1) family protein
          Length = 195

 Score =  304 bits (779), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 152/186 (81%), Positives = 162/186 (87%), Gaps = 3/186 (1%)

Query: 10  NAWAKEMTIRRRITSIFNKTREHFPSLKDYNDYLEEVEDMTFNLIEGIDVEVIEAKIARY 69
           NAWAKEMTIRRR+ SIFNKT++HF  LKDYNDYLEEVEDMTFNLIEGIDVE IEAKIARY
Sbjct: 13  NAWAKEMTIRRRMASIFNKTQDHFSCLKDYNDYLEEVEDMTFNLIEGIDVEEIEAKIARY 72

Query: 70  QQENAEQIYLSRAKRAEDLAAALKASRMNPGKAGANDTXXXXXXXXXXXXXVQEGQYAPA 129
           QQENAEQIYLSRAKRAEDLAAALKASRMNPGKA A+DT             VQ GQYAPA
Sbjct: 73  QQENAEQIYLSRAKRAEDLAAALKASRMNPGKAAASDTAAGSSQGISSSAGVQ-GQYAPA 131

Query: 130 AVPGGLAQPRPTGMAPQPIGGSSVPLQGDDEETMRLRAESGARAGGWSIEMCKRRALQEA 189
           AV  G++QPRPTGMAPQPIGGSS PLQGDDEETMRLRAE GARAGGW+IEM KRRAL+EA
Sbjct: 132 AV--GMSQPRPTGMAPQPIGGSSDPLQGDDEETMRLRAERGARAGGWTIEMGKRRALEEA 189

Query: 190 FSTIFV 195
           FS+IF+
Sbjct: 190 FSSIFI 195



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.131    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,784,542
Number of extensions: 301797
Number of successful extensions: 1158
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1156
Number of HSP's successfully gapped: 2
Length of query: 195
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 100
Effective length of database: 12,075,471
Effective search space: 1207547100
Effective search space used: 1207547100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 153 (63.5 bits)