Os11g0473100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cdk-activating kinase assembly factor (MAT1) family protein.
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Os11g0473100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cdk-activating kinase assembly factor (MAT1) family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.93 | 0.193 | 12.2 | -0.705 | 0.368 | 0.0697 | 0.101 | -2.03 | -0.189 | 18.7 | 18.61 | 3167 | -- | -- |
| 20.64 | 0.212 | 12.1 | -0.169 | 0.377 | 0.0822 | 0.115 | -- | -0.0517 | 18.7 | 16.67 | 11394 | -- | -- |
| 16.96 | 0.192 | 12.2 | -0.706 | 0.369 | 0.0699 | -- | -2.03 | -0.188 | 18.7 | 18.6 | 3141 | -- | -- |
| 20.55 | 0.211 | 12.1 | -0.187 | 0.369 | 0.123 | -- | -- | -0.0595 | 18.6 | 12.25 | 11160 | -- | -- |
| 24.02 | 0.228 | 12.2 | -0.738 | -- | 0.0701 | -- | -2.09 | -0.202 | -- | 18.94 | 3096 | -- | -- |
| 20.79 | 0.214 | 12.1 | -0.123 | 0.373 | -- | 0.105 | -- | -0.0249 | 18.8 | -- | -- | -- | -- |
| 20.82 | 0.214 | 12.1 | -0.125 | 0.374 | -- | -- | -- | -0.0245 | 18.7 | -- | -- | -- | -- |
| 27.49 | 0.245 | 12.1 | -0.171 | -- | 0.197 | -- | -- | -0.0595 | -- | 15.58 | 19297 | -- | -- |
| 19.95 | 0.208 | 12.1 | -- | 0.379 | -0.164 | -- | -- | 0.0345 | 18.8 | 31.9 | 47520 | -- | -- |
| 28.11 | 0.248 | 12.1 | -0.133 | -- | -- | -- | -- | -0.0319 | -- | -- | -- | -- | -- |
| 21.23 | 0.216 | 12.1 | -- | 0.375 | -- | -- | -- | -0.0106 | 18.7 | -- | -- | -- | -- |
| 27.25 | 0.243 | 12.1 | -- | -- | -0.162 | -- | -- | 0.0297 | -- | 31.5 | 47520 | -- | -- |
| 28.58 | 0.25 | 12.1 | -- | -- | -- | -- | -- | -0.0171 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.21 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 7 |
| 2 | 16.23 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 4 | 16.25 | wind | 1.0 | 14400 | < th | dose independent | rect. | 20 | 6 |
| 6 | 16.33 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 7 | 16.35 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 9 | 16.37 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 3 |
| 11 | 16.40 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 3 |
| 12 | 16.41 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 14 | 16.42 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 17 | 16.46 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 22 | 16.47 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 18 | 19 |
| 30 | 16.50 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 34 | 16.51 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 21 | 18 |
| 39 | 16.52 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 11 | 19 |
| 55 | 16.56 | atmosphere | 995.0 | 43200 | > th | dose independent | sin | 6 | NA |
| 58 | 16.56 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 18 | 18 |
| 67 | 16.58 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 15 | 19 |
| 68 | 16.59 | atmosphere | 995.0 | 43200 | < th | dose independent | sin | 6 | NA |
| 78 | 16.61 | wind | 1.0 | 14400 | > th | dose independent | rect. | 20 | 6 |
| 95 | 16.63 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 118 | 16.68 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 21 | 16 |
| 134 | 16.70 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 139 | 16.71 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 141 | 16.71 | wind | 1.0 | 14400 | > th | dose independent | rect. | 22 | 4 |
| 142 | 16.71 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 8 | 4 |
| 144 | 16.71 | atmosphere | 995.0 | 43200 | < th | dose dependent | sin | 16 | NA |
| 145 | 16.71 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 168 | 16.74 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 172 | 16.74 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 173 | 16.74 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 180 | 16.74 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 181 | 16.74 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 182 | 16.74 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 10 | 3 |
| 183 | 16.74 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 10 | 3 |
| 184 | 16.74 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 12 | 5 |
| 218 | 16.76 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 20 | 3 |
| 243 | 16.78 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 246 | 16.78 | radiation | 10.0 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 254 | 16.79 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 8 | 5 |
| 260 | 16.79 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 5 |
| 261 | 16.79 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 8 | 5 |
| 267 | 16.80 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 289 | 16.80 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 295 | 16.80 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 17 | 5 |
| 313 | 16.81 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 19 | 13 |
| 326 | 16.82 | atmosphere | 995.0 | 43200 | < th | dose dependent | sin | 10 | NA |
| 329 | 16.82 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 2 |
| 343 | 16.83 | atmosphere | 995.0 | 43200 | < th | dose dependent | no | NA | NA |
| 348 | 16.83 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 21 | 22 |
| 365 | 16.84 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 366 | 16.84 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 380 | 16.85 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 407 | 16.86 | wind | 5.0 | 43200 | > th | dose independent | rect. | 21 | 6 |
| 416 | 16.86 | radiation | 10.0 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 417 | 16.86 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 420 | 16.86 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 437 | 16.87 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 477 | 16.88 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 1 | 23 |
| 494 | 16.89 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 512 | 16.90 | wind | 7.0 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 513 | 16.90 | wind | 5.0 | 43200 | < th | dose independent | rect. | 21 | 6 |
| 523 | 16.90 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 22 | 11 |
| 535 | 16.91 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 536 | 16.91 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 538 | 16.91 | wind | 7.0 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 568 | 16.91 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 16 | 21 |
| 571 | 16.91 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 636 | 16.93 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 10 | 3 |
| 658 | 16.94 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 694 | 16.95 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 18 | 5 |
| 706 | 16.96 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 4 | 5 |
| 709 | 16.96 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 2 | 8 |
| 728 | 16.97 | temperature | 20.0 | 4320 | > th | dose independent | sin | 13 | NA |
| 730 | 16.97 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 757 | 16.97 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 759 | 16.97 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 1 | 8 |
| 773 | 16.98 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 775 | 16.98 | wind | 5.0 | 43200 | > th | dose independent | rect. | 20 | 9 |
| 793 | 16.99 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 804 | 16.99 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 11 | NA |
| 808 | 16.99 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 17 | 8 |
| 815 | 17.00 | temperature | 20.0 | 4320 | < th | dose independent | sin | 13 | NA |
| 861 | 17.01 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 18 | 8 |
| 929 | 17.04 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 931 | 17.04 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 945 | 17.04 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 965 | 17.05 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 18 | 9 |
| 970 | 17.05 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 984 | 17.06 | radiation | 20.0 | 1440 | < th | dose independent | sin | 4 | NA |