BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0473100 Os11g0473100|AK065754
         (195 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G30820.1  | chr4:15007144-15008378 FORWARD LENGTH=179          123   7e-29

>AT4G30820.1 | chr4:15007144-15008378 FORWARD LENGTH=179
          Length = 178

 Score =  123 bits (308), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 80/183 (43%), Positives = 110/183 (60%), Gaps = 20/183 (10%)

Query: 17  KEMTIRRRMASIFNKTQDHFSCLKDYNDYLEEVEDMTFNLIEGIDVEEIEAKIARYQQEN 76
           KE+ +RRR++ I+N+ ++ F  LKDYNDYLEEVE M F+LI+GI+VE IE KI RY +EN
Sbjct: 12  KEIHVRRRISEIYNRREEEFPSLKDYNDYLEEVECMVFDLIDGINVEAIEQKIKRYSKEN 71

Query: 77  AEQIYLSRAKRAEDLAAALKASRMNPGKAAASDTXXXXXXXXXXXXXXXXXYAPAAVGMS 136
           AEQI ++RA++AE+L AAL A +  P +  A DT                 Y  A+    
Sbjct: 72  AEQIMINRARKAEELTAALAACKAKPPQTDA-DT------SSNHGVTAGTTYGQAS---- 120

Query: 137 QPRPTGMAPQPI----GGSSDPLQGDDEETMRLXXXXXXXXXXWTIEMGKRRALEEAFSS 192
             RPTGM PQP+    G        +DE T R+          +++E+ KRRALEEAF+S
Sbjct: 121 --RPTGMGPQPVPIVGGAERQHYAMEDEATRRM---KAERAGGFSLEISKRRALEEAFAS 175

Query: 193 IFI 195
           I++
Sbjct: 176 IWV 178



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.129    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,171,665
Number of extensions: 107116
Number of successful extensions: 362
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 360
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 102
Effective length of database: 8,556,881
Effective search space: 872801862
Effective search space used: 872801862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)