Os06g0171700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cdk-activating kinase assembly factor (MAT1) family protein.
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Os06g0171700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cdk-activating kinase assembly factor (MAT1) family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.49 | 0.303 | 8.36 | 0.198 | 0.237 | -1.25 | 0.278 | -0.677 | -0.016 | 10.4 | 28.98 | 23 | -- | -- |
| 41.94 | 0.302 | 8.37 | 0.0806 | 0.237 | -1.23 | 0.465 | -- | -0.0391 | 10.8 | 29.53 | 21 | -- | -- |
| 41.73 | 0.301 | 8.36 | 0.231 | 0.232 | -1.27 | -- | -0.839 | -0.0133 | 10.1 | 28.96 | 21 | -- | -- |
| 42.76 | 0.305 | 8.37 | 0.0892 | 0.232 | -1.27 | -- | -- | -0.0425 | 10 | 29.76 | 19 | -- | -- |
| 44.63 | 0.311 | 8.37 | 0.209 | -- | -1.39 | -- | -0.892 | -0.0328 | -- | 29.01 | 17 | -- | -- |
| 62.75 | 0.371 | 8.32 | 0.373 | 0.573 | -- | 0.661 | -- | 0.209 | 12.9 | -- | -- | -- | -- |
| 64.58 | 0.376 | 8.31 | 0.397 | 0.571 | -- | -- | -- | 0.213 | 12.9 | -- | -- | -- | -- |
| 45.56 | 0.314 | 8.38 | 0.0636 | -- | -1.39 | -- | -- | -0.0611 | -- | 29.8 | 10 | -- | -- |
| 42.95 | 0.305 | 8.38 | -- | 0.229 | -1.3 | -- | -- | -0.0545 | 9.85 | 29.76 | 19 | -- | -- |
| 84.93 | 0.431 | 8.32 | 0.376 | -- | -- | -- | -- | 0.202 | -- | -- | -- | -- | -- |
| 68.74 | 0.388 | 8.32 | -- | 0.565 | -- | -- | -- | 0.168 | 12.8 | -- | -- | -- | -- |
| 45.65 | 0.315 | 8.39 | -- | -- | -1.41 | -- | -- | -0.0719 | -- | 29.77 | 11 | -- | -- |
| 88.66 | 0.439 | 8.33 | -- | -- | -- | -- | -- | 0.16 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.04 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 3 | 40.82 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 22 |
| 4 | 40.99 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 14 | 41.54 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 22 |
| 17 | 41.66 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 18 | 41.70 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 23 | 41.77 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 25 | 41.81 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 26 | 41.82 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 28 | 41.90 | temperature | 15 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 29 | 41.95 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 19 |
| 35 | 42.07 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 37 | 42.09 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 39 | 42.13 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 7 |
| 41 | 42.16 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 3 |
| 70 | 42.48 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 96 | 42.64 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |
| 119 | 42.75 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 22 |
| 123 | 42.81 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 135 | 42.85 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 149 | 42.89 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 165 | 42.98 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 219 | 43.18 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 327 | 43.51 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 12 |
| 363 | 43.58 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 22 |
| 384 | 43.64 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 421 | 43.70 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 520 | 43.86 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 7 |
| 521 | 43.86 | temperature | 15 | 1440 | > th | dose dependent | sin | 13 | NA |
| 561 | 43.92 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 5 |
| 596 | 43.94 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 613 | 43.97 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 648 | 44.02 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 23 |
| 671 | 44.05 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 23 |
| 741 | 44.13 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 828 | 44.22 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 844 | 44.24 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 893 | 44.29 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 7 |
| 950 | 44.35 | temperature | 15 | 720 | > th | dose dependent | rect. | 8 | 23 |