BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0171700 Os06g0171700|AK103771
         (195 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G30820.1  | chr4:15007144-15008378 FORWARD LENGTH=179          144   3e-35

>AT4G30820.1 | chr4:15007144-15008378 FORWARD LENGTH=179
          Length = 178

 Score =  144 bits (363), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 89/186 (47%), Positives = 118/186 (63%), Gaps = 23/186 (12%)

Query: 14  KEMTIRRRITSIFNKTREHFPSLKDYNDYLEEVEDMTFNLIEGIDVEVIEAKIARYQQEN 73
           KE+ +RRRI+ I+N+  E FPSLKDYNDYLEEVE M F+LI+GI+VE IE KI RY +EN
Sbjct: 12  KEIHVRRRISEIYNRREEEFPSLKDYNDYLEEVECMVFDLIDGINVEAIEQKIKRYSKEN 71

Query: 74  AEQIYLSRAKRAEDLAAALKASRMNPGKAGANDTXXXXXXXXXXXXXVQEGQYAPAAVPG 133
           AEQI ++RA++AE+L AAL A +  P +  A+ +                     A    
Sbjct: 72  AEQIMINRARKAEELTAALAACKAKPPQTDADTSS---------------NHGVTAGTTY 116

Query: 134 GLAQPRPTGMAPQPI----GGSSVPLQGDDEETMRLRAESGARAGGWSIEMCKRRALQEA 189
           G A  RPTGM PQP+    G        +DE T R++AE   RAGG+S+E+ KRRAL+EA
Sbjct: 117 GQAS-RPTGMGPQPVPIVGGAERQHYAMEDEATRRMKAE---RAGGFSLEISKRRALEEA 172

Query: 190 FSTIFV 195
           F++I+V
Sbjct: 173 FASIWV 178



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.131    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,849,815
Number of extensions: 150125
Number of successful extensions: 416
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 414
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 102
Effective length of database: 8,556,881
Effective search space: 872801862
Effective search space used: 872801862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 109 (46.6 bits)