BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0168400 Os06g0168400|AK109865
         (244 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0168400  Conserved hypothetical protein                      473   e-134
Os12g0533600  Conserved hypothetical protein                      212   2e-55

>Os06g0168400 Conserved hypothetical protein
          Length = 244

 Score =  473 bits (1218), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 231/244 (94%), Positives = 231/244 (94%)

Query: 1   MDALREAEAKLTVYVHPSNAADVRRAVARQLSSLLFSYEDRFDGVLLAHEATVESEQGKI 60
           MDALREAEAKLTVYVHPSNAADVRRAVARQLSSLLFSYEDRFDGVLLAHEATVESEQGKI
Sbjct: 1   MDALREAEAKLTVYVHPSNAADVRRAVARQLSSLLFSYEDRFDGVLLAHEATVESEQGKI 60

Query: 61  LNGLVPYFGVPVHANLLLYSPKPDMMLEGKVEMLGKESIHAIVLGVFSAAIMLDDIHEXX 120
           LNGLVPYFGVPVHANLLLYSPKPDMMLEGKVEMLGKESIHAIVLGVFSAAIMLDDIHE  
Sbjct: 61  LNGLVPYFGVPVHANLLLYSPKPDMMLEGKVEMLGKESIHAIVLGVFSAAIMLDDIHEKF 120

Query: 121 XXXXXXXXXXXVSRSDKQHVIKKGSMIRFSVKRYGLIFSPLDSFKIFIHCLLSTVKHLYS 180
                      VSRSDKQHVIKKGSMIRFSVKRYGLIFSPLDSFKIFIHCLLSTVKHLYS
Sbjct: 121 KFKRKKYGGKFVSRSDKQHVIKKGSMIRFSVKRYGLIFSPLDSFKIFIHCLLSTVKHLYS 180

Query: 181 KVMALVCYYICNLLVVCSTCCTLFTNMHCSSMLELFFPWCAYYDRSPEKSHFDTMALKSN 240
           KVMALVCYYICNLLVVCSTCCTLFTNMHCSSMLELFFPWCAYYDRSPEKSHFDTMALKSN
Sbjct: 181 KVMALVCYYICNLLVVCSTCCTLFTNMHCSSMLELFFPWCAYYDRSPEKSHFDTMALKSN 240

Query: 241 NKTM 244
           NKTM
Sbjct: 241 NKTM 244



>Os12g0533600 Conserved hypothetical protein
          Length = 141

 Score =  212 bits (540), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 103/137 (75%), Positives = 114/137 (83%)

Query: 1   MDALREAEAKLTVYVHPSNAADVRRAVARQLSSLLFSYEDRFDGVLLAHEATVESEQGKI 60
           M+ALREAEA+LTVYVHPSNAADVRRAV+RQLS+ LFSYEDRF+GVLLAHE  V  ++ KI
Sbjct: 1   MEALREAEAELTVYVHPSNAADVRRAVSRQLSTTLFSYEDRFEGVLLAHEVVVNGDRAKI 60

Query: 61  LNGLVPYFGVPVHANLLLYSPKPDMMLEGKVEMLGKESIHAIVLGVFSAAIMLDDIHEXX 120
           LNGLVPYFGVPVHANLLLYSP+PDM+LEGKVE+LGKESIHAIVLGVFSAAIM DDI+E  
Sbjct: 61  LNGLVPYFGVPVHANLLLYSPQPDMILEGKVELLGKESIHAIVLGVFSAAIMADDINEKF 120

Query: 121 XXXXXXXXXXXVSRSDK 137
                        R DK
Sbjct: 121 KFKRVRPAFLLTRRGDK 137



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,898,250
Number of extensions: 249508
Number of successful extensions: 632
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 632
Number of HSP's successfully gapped: 2
Length of query: 244
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 146
Effective length of database: 11,918,829
Effective search space: 1740149034
Effective search space used: 1740149034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 154 (63.9 bits)