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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0168400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.25 (0.0206) R2 : 0.181
β1 : 0.756 (0.0754) R2dD : 0.187 R2D : 0.174
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0725 (0.0439) R2dN8 : 0.00655 R2N8 : -0.00667
σ : 0.386
deviance : 68.35
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
42.21 0.305 8.27 0.667 0.571 0.443 -0.102 0.161 0.0218 17.5 19.99 196 -- --
41.85 0.301 8.28 0.658 0.575 0.404 -0.0509 -- 0.0109 17.5 20.44 178 -- --
42.24 0.303 8.27 0.663 0.571 0.438 -- 0.135 0.0213 17.5 20 194 -- --
41.86 0.301 8.28 0.661 0.576 0.398 -- -- 0.0119 17.5 20.45 174 -- --
58.53 0.356 8.27 0.642 -- 0.533 -- 0.197 -0.00745 -- 20.4 213 -- --
47.62 0.323 8.26 0.778 0.629 -- 0.0198 -- 0.0883 17.2 -- -- -- --
47.62 0.323 8.26 0.778 0.629 -- -- -- 0.0884 17.2 -- -- -- --
51.85 0.335 8.3 0.676 -- 0.407 -- -- -0.115 -- 25.18 237 -- --
51.88 0.335 8.3 -- 0.579 0.658 -- -- -0.0782 16.8 19.5 461 -- --
68.35 0.386 8.25 0.756 -- -- -- -- 0.0725 -- -- -- -- --
63.58 0.373 8.28 -- 0.616 -- -- -- 0.00172 17.2 -- -- -- --
61.73 0.366 8.32 -- -- 0.531 -- -- -0.229 -- 25.2 261 -- --
83.43 0.426 8.27 -- -- -- -- -- -0.0114 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 34.35 temperature 10.0 270 > th dose dependent rect. 20 15
7 35.29 temperature 30.0 270 < th dose dependent rect. 1 5
8 35.43 temperature 30.0 270 < th dose dependent rect. 3 2
10 35.64 temperature 20.0 270 > th dose independent rect. 19 16
13 35.72 temperature 10.0 90 > th dose dependent rect. 8 19
15 35.81 temperature 20.0 270 > th dose independent rect. 6 20
42 36.62 temperature 10.0 10 > th dose dependent rect. 9 18
44 36.67 temperature 25.0 270 < th dose independent rect. 3 2
49 36.78 temperature 20.0 90 > th dose independent rect. 8 19
54 36.85 temperature 25.0 270 < th dose independent rect. 2 4
59 36.89 atmosphere 1000.0 90 > th dose dependent rect. 3 5
77 37.17 temperature 10.0 270 > th dose dependent rect. 19 7
93 37.29 temperature 20.0 10 > th dose independent rect. 8 20
113 37.48 atmosphere 1000.0 10 > th dose dependent rect. 3 5
115 37.49 precipitation 0.1 270 < th dose independent rect. 3 2
116 37.49 precipitation 0.1 270 < th dose dependent rect. 3 2
117 37.50 atmosphere 995.0 270 > th dose dependent rect. 3 2
131 37.63 wind 5.0 270 < th dose independent rect. 3 2
138 37.70 wind 5.0 270 < th dose independent rect. 2 4
139 37.71 wind 1.0 270 > th dose independent rect. 1 5
142 37.72 precipitation 0.1 270 < th dose independent rect. 2 4
143 37.72 precipitation 0.1 270 < th dose dependent rect. 2 4
149 37.80 wind 9.0 270 < th dose independent rect. 5 22
154 37.83 wind 1.0 270 > th dose independent rect. 3 1
169 37.92 wind 9.0 270 < th dose independent rect. 6 20
177 37.96 temperature 20.0 270 > th dose independent rect. 19 7
179 37.96 radiation 1.0 270 < th dose dependent rect. 3 2
183 37.99 precipitation 0.1 270 < th dose independent rect. 6 20
185 37.99 precipitation 0.1 270 < th dose dependent rect. 6 20
187 38.01 atmosphere 1005.0 270 > th dose independent rect. 3 3
191 38.02 temperature 10.0 270 > th dose independent rect. 3 2
194 38.02 humidity 50.0 270 > th dose independent rect. 3 2
197 38.02 atmosphere 995.0 270 > th dose independent rect. 3 2
198 38.02 atmosphere 1010.0 270 < th dose independent rect. 3 2
200 38.02 radiation 20.0 270 < th dose independent rect. 3 2
206 38.03 radiation 40.0 270 < th dose dependent rect. 3 2
210 38.04 temperature 30.0 90 < th dose dependent rect. 3 16
221 38.09 radiation 1.0 270 < th dose independent rect. 3 2
226 38.10 precipitation 0.1 90 < th dose independent rect. 8 19
227 38.10 precipitation 0.1 270 < th dose independent rect. 5 22
228 38.10 precipitation 0.1 90 < th dose dependent rect. 8 19
229 38.10 precipitation 0.1 270 < th dose dependent rect. 5 22
231 38.11 temperature 10.0 270 > th dose independent rect. 2 4
234 38.11 humidity 50.0 270 > th dose independent rect. 2 4
237 38.11 atmosphere 995.0 270 > th dose independent rect. 2 4
238 38.11 atmosphere 1015.0 270 < th dose independent rect. 2 4
239 38.11 radiation 20.0 270 < th dose independent rect. 2 4
248 38.13 wind 9.0 90 < th dose independent rect. 8 19
261 38.18 temperature 15.0 270 > th dose independent rect. 6 8
271 38.21 radiation 40.0 270 < th dose dependent rect. 2 4
316 38.36 temperature 10.0 270 > th dose dependent rect. 6 7
403 38.60 wind 9.0 270 < th dose dependent rect. 3 2
404 38.60 wind 9.0 90 < th dose dependent rect. 3 5
412 38.64 wind 7.0 270 < th dose independent rect. 6 8
438 38.69 wind 9.0 90 < th dose dependent rect. 8 19
457 38.72 precipitation 0.1 10 < th dose independent rect. 3 6
460 38.72 precipitation 0.1 10 < th dose dependent rect. 3 6
466 38.73 wind 9.0 270 < th dose dependent rect. 6 7
468 38.74 temperature 15.0 10 > th dose dependent rect. 21 17
486 38.76 radiation 1.0 270 < th dose dependent rect. 2 9
523 38.81 humidity 50.0 270 > th dose independent rect. 6 8
530 38.82 temperature 20.0 10 > th dose independent rect. 21 17
541 38.84 precipitation 0.1 270 < th dose independent rect. 6 8
543 38.84 precipitation 0.1 270 < th dose dependent rect. 6 8
549 38.86 atmosphere 995.0 270 > th dose independent rect. 14 16
571 38.91 radiation 1.0 270 < th dose independent rect. 2 9
579 38.92 atmosphere 995.0 270 > th dose independent rect. 6 8
580 38.92 atmosphere 1015.0 270 < th dose independent rect. 6 8
581 38.92 temperature 10.0 270 > th dose independent rect. 14 16
608 38.99 wind 5.0 10 < th dose independent rect. 3 6
610 38.99 precipitation 0.1 10 < th dose independent rect. 9 18
613 38.99 humidity 50.0 270 > th dose dependent rect. 3 2
616 38.99 precipitation 0.1 10 < th dose dependent rect. 9 18
623 39.01 precipitation 0.1 270 < th dose independent rect. 14 16
625 39.01 precipitation 0.1 270 < th dose dependent rect. 14 16
632 39.03 temperature 10.0 43200 > th dose independent rect. 10 5
640 39.03 wind 9.0 270 < th dose dependent rect. 6 19
642 39.04 temperature 10.0 90 > th dose dependent sin 6 NA
652 39.06 wind 9.0 270 < th dose independent rect. 14 16
666 39.08 wind 9.0 10 < th dose independent rect. 9 18
708 39.16 radiation 40.0 270 < th dose independent rect. 14 16
739 39.20 temperature 30.0 90 < th dose dependent sin 6 NA
769 39.24 precipitation 0.1 270 < th dose independent rect. 2 15
772 39.24 atmosphere 995.0 90 > th dose independent rect. 8 19
774 39.24 precipitation 0.1 270 < th dose dependent rect. 2 15
823 39.30 temperature 10.0 10 > th dose independent rect. 3 6
825 39.30 temperature 30.0 10 < th dose independent rect. 3 6
826 39.30 humidity 50.0 10 > th dose independent rect. 3 6
828 39.30 atmosphere 995.0 10 > th dose independent rect. 3 6
829 39.30 atmosphere 1015.0 10 < th dose independent rect. 3 6
830 39.30 temperature 20.0 10 > th dose independent rect. 20 8
841 39.33 humidity 50.0 270 > th dose independent rect. 6 20
847 39.34 precipitation 0.1 270 < th dose independent rect. 17 9
853 39.34 precipitation 0.1 270 < th dose dependent rect. 17 9
929 39.42 humidity 50.0 270 > th dose dependent rect. 2 4
950 39.45 atmosphere 995.0 270 > th dose independent rect. 2 16