BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0167400 Os06g0167400|AK102123
         (299 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0167400  Di-trans-poly-cis-decaprenylcistransferase fam...   626   e-180
Os07g0607700  Di-trans-poly-cis-decaprenylcistransferase fam...   589   e-169
Os01g0857200  Di-trans-poly-cis-decaprenylcistransferase fam...   125   5e-29

>Os06g0167400 Di-trans-poly-cis-decaprenylcistransferase family protein
          Length = 299

 Score =  626 bits (1614), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 299/299 (100%), Positives = 299/299 (100%)

Query: 1   MLGSLMSYSPSVDSKTENTDELIATGVLASLQNFIRKCIVAVLSYGPMPKHIAFIMDGNR 60
           MLGSLMSYSPSVDSKTENTDELIATGVLASLQNFIRKCIVAVLSYGPMPKHIAFIMDGNR
Sbjct: 1   MLGSLMSYSPSVDSKTENTDELIATGVLASLQNFIRKCIVAVLSYGPMPKHIAFIMDGNR 60

Query: 61  RYAKFRSIQEGSGHRVGFSALIASLLYCYEMGVKYITVYAFSIDNFKRDPTEVKSLMELM 120
           RYAKFRSIQEGSGHRVGFSALIASLLYCYEMGVKYITVYAFSIDNFKRDPTEVKSLMELM
Sbjct: 61  RYAKFRSIQEGSGHRVGFSALIASLLYCYEMGVKYITVYAFSIDNFKRDPTEVKSLMELM 120

Query: 121 EEKINELLENRNVINKVNCKINFWGNLDMLSKSVRVAAEKLMATTAENTGLVFSVCMPYN 180
           EEKINELLENRNVINKVNCKINFWGNLDMLSKSVRVAAEKLMATTAENTGLVFSVCMPYN
Sbjct: 121 EEKINELLENRNVINKVNCKINFWGNLDMLSKSVRVAAEKLMATTAENTGLVFSVCMPYN 180

Query: 181 STSEIVNAVNKVCAERRDILQREDADSVANNGVYSDISVADLDRHMYSAGCPDPDIVIRT 240
           STSEIVNAVNKVCAERRDILQREDADSVANNGVYSDISVADLDRHMYSAGCPDPDIVIRT
Sbjct: 181 STSEIVNAVNKVCAERRDILQREDADSVANNGVYSDISVADLDRHMYSAGCPDPDIVIRT 240

Query: 241 SGETRLSNFLLWQTTFSHLQNPDPLWPEFSFKHLVWAILQYQRVHPSIEQSRNLAKKQL 299
           SGETRLSNFLLWQTTFSHLQNPDPLWPEFSFKHLVWAILQYQRVHPSIEQSRNLAKKQL
Sbjct: 241 SGETRLSNFLLWQTTFSHLQNPDPLWPEFSFKHLVWAILQYQRVHPSIEQSRNLAKKQL 299



>Os07g0607700 Di-trans-poly-cis-decaprenylcistransferase family protein
          Length = 299

 Score =  589 bits (1518), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 282/299 (94%), Positives = 288/299 (96%)

Query: 1   MLGSLMSYSPSVDSKTENTDELIATGVLASLQNFIRKCIVAVLSYGPMPKHIAFIMDGNR 60
           MLGSL+SYSPSV+ KTEN DELIATGVLASLQNFIRKCIVAVLSYGPMPKHIAFIMDGNR
Sbjct: 1   MLGSLISYSPSVNPKTENPDELIATGVLASLQNFIRKCIVAVLSYGPMPKHIAFIMDGNR 60

Query: 61  RYAKFRSIQEGSGHRVGFSALIASLLYCYEMGVKYITVYAFSIDNFKRDPTEVKSLMELM 120
           RYAKFRSIQEGSGHR+GFSALIASLLYCYEMGVKYITVYAFSIDNFKRD TEVKSLMELM
Sbjct: 61  RYAKFRSIQEGSGHRMGFSALIASLLYCYEMGVKYITVYAFSIDNFKRDLTEVKSLMELM 120

Query: 121 EEKINELLENRNVINKVNCKINFWGNLDMLSKSVRVAAEKLMATTAENTGLVFSVCMPYN 180
           EEKINELLENRNVINKVNCKINFWG LDMLS+ VRVAAEKLM +TAEN GLVFSVCMPYN
Sbjct: 121 EEKINELLENRNVINKVNCKINFWGKLDMLSEPVRVAAEKLMVSTAENKGLVFSVCMPYN 180

Query: 181 STSEIVNAVNKVCAERRDILQREDADSVANNGVYSDISVADLDRHMYSAGCPDPDIVIRT 240
           STSEIV AVNKVCAERRDILQRED DSVANNGV+SDISVADLD HMYSAGCPDPDIVIRT
Sbjct: 181 STSEIVIAVNKVCAERRDILQREDVDSVANNGVHSDISVADLDHHMYSAGCPDPDIVIRT 240

Query: 241 SGETRLSNFLLWQTTFSHLQNPDPLWPEFSFKHLVWAILQYQRVHPSIEQSRNLAKKQL 299
           SGETRLSNFLLWQTTFSHLQNPDPLWPEFSFKHLVWAILQYQRVHP IEQSRNLAKKQL
Sbjct: 241 SGETRLSNFLLWQTTFSHLQNPDPLWPEFSFKHLVWAILQYQRVHPYIEQSRNLAKKQL 299



>Os01g0857200 Di-trans-poly-cis-decaprenylcistransferase family protein
          Length = 295

 Score =  125 bits (313), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 130/257 (50%), Gaps = 14/257 (5%)

Query: 26  GVLASLQNFIRKCIVAVLSYGPMPKHIAFIMDGNRRYAKFRSIQEGSGHRVGFSALIASL 85
           G   + ++ +  C+ A      +P+H+A +MDGN R+A+ R +   +GH  G  AL  ++
Sbjct: 42  GAAPAAESLLPGCLRA----ESLPRHVAVVMDGNARWARARGLPSAAGHEAGRRALEETV 97

Query: 86  LYCYEMGVKYITVYAFSIDNFKRDPTEVKSLMELMEEKINELLENRNVINKVNCKINFWG 145
                 G++ +T +AFS +N+ R   EV  LM L E  I++ +       +   ++   G
Sbjct: 98  RLSRAWGIRALTAFAFSNENWSRPKVEVDFLMRLFERVIHDSVAE---FLREGIRLRVIG 154

Query: 146 NLDMLSKSVRVAAEKLMATTAENTGLVFSVCMPYNSTSEIVNAVNKVCAERRDILQREDA 205
           +   L  S++  A +   TT  N+ L  ++ + Y+   +IV A  K+        Q+  +
Sbjct: 155 DSSRLPVSLQKIAREAEETTRNNSQLDLTLAISYSGRRDIVQACRKLA-------QKVQS 207

Query: 206 DSVANNGVYSDISVADLDRHMYSAGCPDPDIVIRTSGETRLSNFLLWQTTFSHLQNPDPL 265
            ++A   +   +   +L+    +   P PD++IRTSGE RLSNFLLWQ+ +S L   + L
Sbjct: 208 KALAAEDIDEALFADELETSCAADEFPYPDLLIRTSGELRLSNFLLWQSAYSELFFTNTL 267

Query: 266 WPEFSFKHLVWAILQYQ 282
           WP+F     + A+  +Q
Sbjct: 268 WPDFGEADYLEALCSFQ 284



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.133    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,393,397
Number of extensions: 372221
Number of successful extensions: 824
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 823
Number of HSP's successfully gapped: 3
Length of query: 299
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 199
Effective length of database: 11,814,401
Effective search space: 2351065799
Effective search space used: 2351065799
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)