BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0166400 Os06g0166400|AK107775
         (184 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0166400  Similar to TINY-like protein (AP2 domain conta...   166   1e-41
Os04g0648900  Similar to Dehydration responsive element bind...    99   2e-21

>Os06g0166400 Similar to TINY-like protein (AP2 domain containing protein
           RAP2.10) (Fragment)
          Length = 184

 Score =  166 bits (419), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 95/184 (51%), Positives = 95/184 (51%)

Query: 1   MDRREATVFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMRKWGKWVAEI 60
           MDRREATVFL                                       MRKWGKWVAEI
Sbjct: 1   MDRREATVFLPPPPPPQPTQPQQQPAAAAVRAPVGGRGGGGGRQYRGVRMRKWGKWVAEI 60

Query: 61  REPNKRSRIWLGXXXXXXXXXXXXXXXXFYLRGRSARLNFPDQLDXXXXXXXXXXXXEDH 120
           REPNKRSRIWLG                FYLRGRSARLNFPDQLD            EDH
Sbjct: 61  REPNKRSRIWLGSYSTAVAAARAYDTAVFYLRGRSARLNFPDQLDGAGGGGAGAGGAEDH 120

Query: 121 RELTAAVIRKKAAEVGARVDAQHSXXXXXXXXXXXXXXXXXXXXXXTKNPDLNREPTPDT 180
           RELTAAVIRKKAAEVGARVDAQHS                      TKNPDLNREPTPDT
Sbjct: 121 RELTAAVIRKKAAEVGARVDAQHSVVGAAAPVPLQPPQPPPPQRRRTKNPDLNREPTPDT 180

Query: 181 SDDE 184
           SDDE
Sbjct: 181 SDDE 184



>Os04g0648900 Similar to Dehydration responsive element binding protein 2F
           (DREB2F protein)
          Length = 233

 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 73/167 (43%), Gaps = 32/167 (19%)

Query: 50  MRKWGKWVAEIREPNKRSRIWLGXXXXXXXXXXXXXXXXFYLRGRSARLNFPDQLDXXXX 109
           MRKWGKWVAEIREP+KR+RIWLG                FYLRGRSARLNFP+++     
Sbjct: 67  MRKWGKWVAEIREPHKRTRIWLGSYATPVAAARAYDTAVFYLRGRSARLNFPEEISSLAS 126

Query: 110 XXXXXXXXE----DHRELTAAVIRKKAAEVGARVDAQHSXXXXXXXXXXXXXXXXXXX-- 163
                   E    D   L+AA IRKKA EVG+RVDA  +                     
Sbjct: 127 LSEGGGASEPREPDGGTLSAASIRKKAIEVGSRVDALQTGMMVAPTTHHRERQKHHHHHH 186

Query: 164 --------------------------XXXTKNPDLNREPTPDTSDDE 184
                                         KNPDLN+ P+P+ SD E
Sbjct: 187 HHHPHLQPHGEEQHHHHEQKHQRTAWSGRAKNPDLNQAPSPENSDAE 233



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.133    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,150,291
Number of extensions: 54259
Number of successful extensions: 255
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 301
Number of HSP's successfully gapped: 2
Length of query: 184
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 89
Effective length of database: 12,075,471
Effective search space: 1074716919
Effective search space used: 1074716919
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)