BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0165300 Os06g0165300|Os06g0165300
(542 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0165300 Conserved hypothetical protein 847 0.0
Os06g0174800 RNA-directed DNA polymerase (Reverse transcrip... 481 e-136
Os02g0307900 Conserved hypothetical protein 201 8e-52
Os06g0174900 151 1e-36
>Os06g0165300 Conserved hypothetical protein
Length = 542
Score = 847 bits (2189), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/503 (84%), Positives = 425/503 (84%)
Query: 40 RSIADRIASSLRTQEAVDALCKKHGVPKGFAARPAGDLRACSTPPPGAVCVYKDALEAGM 99
RSIADRIASSLRTQEAVDALCKKHGVPKGFAARPAGDLRACSTPPPGAVCVYKDALEAGM
Sbjct: 40 RSIADRIASSLRTQEAVDALCKKHGVPKGFAARPAGDLRACSTPPPGAVCVYKDALEAGM 99
Query: 100 RVPLHPFACDVLRHFGLAPSEVTPNGWRIMAGFLVLSHHAGVPPSLAVFRHFFKLCLFKS 159
RVPLHPFACDVLRHFGLAPSEVTPNGWRIMAGFLVLSHHAGVPPSLAVFRHFFKLCLFKS
Sbjct: 100 RVPLHPFACDVLRHFGLAPSEVTPNGWRIMAGFLVLSHHAGVPPSLAVFRHFFKLCLFKS 159
Query: 160 NGWYHFRGKDTVGLLFTGMPTHLKGWKEGFFFLSSSAPWPCQVRWGGPPSKSSIADPVLT 219
NGWYHFRGKDTVGLLFTGMPTHLKGWKEGFFFLSSSAPWPCQVRWGGPPSKSSIADPVLT
Sbjct: 160 NGWYHFRGKDTVGLLFTGMPTHLKGWKEGFFFLSSSAPWPCQVRWGGPPSKSSIADPVLT 219
Query: 220 GEEEKWAAKLLDKHRAAVDLRTYLTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGMDPS 279
GEEEKWAAKLLDKHRAAVDLRTYLTE EGMDPS
Sbjct: 220 GEEEKWAAKLLDKHRAAVDLRTYLTESNLAAAFSSNPAAAASPQPPPPSRSTRAEGMDPS 279
Query: 280 VFEXXXXXXXXXXXXXXXXXXXQKVKTEPESDTPRCSPSSVKKRKFEAEANAKDGTPPTP 339
VFE QKVKTEPESDTPRCSPSSVKKRKFEAEANAKDGTPPTP
Sbjct: 280 VFEMMMSMRAEKAAAAQAPATAQKVKTEPESDTPRCSPSSVKKRKFEAEANAKDGTPPTP 339
Query: 340 HGFSCSASGLSSPPPGFSAQKPTASDQDRKPMFSAQKPTASDHDRTPGHVPDKHDGDTAD 399
HGFSCSASGLSSPPPGFSAQKPTASDQDRKPMFSAQKPTASDHDRTPGHVPDKHDGDTAD
Sbjct: 340 HGFSCSASGLSSPPPGFSAQKPTASDQDRKPMFSAQKPTASDHDRTPGHVPDKHDGDTAD 399
Query: 400 WKAARQLLQGIVTPSRERQFPAAKPSDVVASSYVTLLQAANYATFSXXXXXXXXXXXXXX 459
WKAARQLLQGIVTPSRERQFPAAKPSDVVASSYVTLLQAANYATFS
Sbjct: 400 WKAARQLLQGIVTPSRERQFPAAKPSDVVASSYVTLLQAANYATFSLDYALELEERLRAR 459
Query: 460 XXXXXXXXXXMRKEVEEKAQRGLXXXXXXXVQEYVLSEEHKRELAAHALEGYERGMEDMR 519
MRKEVEEKAQRGL VQEYVLSEEHKRELAAHALEGYERGMEDMR
Sbjct: 460 ERDAAAEADAMRKEVEEKAQRGLAAAKAAAVQEYVLSEEHKRELAAHALEGYERGMEDMR 519
Query: 520 GVALRLSPRLDAARLVVPPGRPD 542
GVALRLSPRLDAARLVVPPGRPD
Sbjct: 520 GVALRLSPRLDAARLVVPPGRPD 542
>Os06g0174800 RNA-directed DNA polymerase (Reverse transcriptase) domain
containing protein
Length = 873
Score = 481 bits (1238), Expect = e-136, Method: Compositional matrix adjust.
Identities = 278/489 (56%), Positives = 317/489 (64%), Gaps = 58/489 (11%)
Query: 40 RSIADRIASSLRTQEAVDALCKKHGVPKGFAARPAGDLRACSTPPPGAVCVYKDALEAGM 99
RS+AD IASSLRTQEAVDA+CKK+GV FAARPAGDLRACS PPPGA CVY ALEAGM
Sbjct: 43 RSVADHIASSLRTQEAVDAVCKKYGVLAEFAARPAGDLRACSAPPPGAACVYARALEAGM 102
Query: 100 RVPLHPFACDVLRHFGLAPSEVTPNGWRIMAGFLVLSHHAGVPPSLAVFRHFFKLCLFKS 159
R+PLHPFAC++LRH G+APS++TPNGWR++AGFL+LSHHA PPSLAVFR FF+L L K
Sbjct: 103 RLPLHPFACELLRHLGVAPSQITPNGWRVVAGFLLLSHHAAAPPSLAVFRRFFRLFLSKL 162
Query: 160 NGWYHFRGKDTV---GLLFTGMPTHLKGWKEGFFFLSSSAPWPCQVRWGG-PPSKSSIAD 215
NGWYHFRGK G+LFTG+P LKGWK GFFF+SS +PWPCQVRWGG PPSKSS A+
Sbjct: 163 NGWYHFRGKRGAGADGVLFTGLPK-LKGWKGGFFFVSSPSPWPCQVRWGGPPPSKSSTAE 221
Query: 216 PVLTGEEEKWAAKLLDKH-RAAVDLRTYLTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXE 274
PVL+GEE + A KLL H AAVDLRTYL E +
Sbjct: 222 PVLSGEEMELAGKLLHLHGGAAVDLRTYLCE-SNLAAVFSSNLAGAAPPQPPPPRPARAK 280
Query: 275 GMDPSVFEXXXXXXXXXXXXXXXXXXXQKVKTEPESDTPRCSPSSVKKRKFEAEAN---- 330
G P E QKVKTEPESD P SP S KKR FEAE N
Sbjct: 281 GKFPFSGE----------------FNAQKVKTEPESDMPWWSPLSGKKRGFEAEENNPPP 324
Query: 331 AKDGTPPTPHG--FSCSASGLSSPPPGFSAQKPTASDQDRKPMFSAQKPTASDHDRTPGH 388
+ TPP PHG +S SASG+ SPPPGF+A H
Sbjct: 325 SPTPTPPAPHGGSWSWSASGMCSPPPGFAA-----------------------------H 355
Query: 389 VPDKHDGDTADWKAARQLLQGIVTPSRERQFPAAKPSDVVASSYVTLLQAANYATFSXXX 448
VPDKHDGD+ADWKAARQLLQ IVTPSRER+FPAAKPSDVVASSY+TLLQAANYA+FS
Sbjct: 356 VPDKHDGDSADWKAARQLLQAIVTPSRERRFPAAKPSDVVASSYLTLLQAANYASFSFGY 415
Query: 449 XXXXXXXXXXXXXXXXXXXXXMRKEVEEKAQRGLXXXXXXXVQEYVLSEEHKRELAAHAL 508
+RKE+EEKA R L VQEY+ S+EH+RELAAHAL
Sbjct: 416 ALELEEKLRARERDAAAEADAVRKELEEKALRELAAAKAAAVQEYLRSDEHRRELAAHAL 475
Query: 509 EGYERGMED 517
EG ++ +++
Sbjct: 476 EGAKKELKN 484
>Os02g0307900 Conserved hypothetical protein
Length = 434
Score = 201 bits (512), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 106/223 (47%), Positives = 138/223 (61%), Gaps = 21/223 (9%)
Query: 42 IADRIASSLRTQEAVDALCKKHGVPKGFAARPAGDLRACSTPPPGA-------------- 87
+ + S+LRTQE++ + ++ VP+GF PAG + PPP
Sbjct: 100 VVEPFRSTLRTQESLAGIRARYSVPEGFGLHPAGANQTACAPPPVTPRGGRGGGAAAAAV 159
Query: 88 -VCVYKDALEAGMRVPLHPFACDVLRHFGLAPSEVTPNGWRIMAGFLVLSHHAGV-PPSL 145
+CVY A AGMR+PLHPF D L HFG+APS++ PNGWR++AGF VL H GV PSL
Sbjct: 160 PICVYAQAFAAGMRLPLHPFVSDALAHFGIAPSQLAPNGWRVLAGFAVLCHFRGVGAPSL 219
Query: 146 AVFRHFFKLC-LFKSNGWYHFRGKDTVGLLFTGMPTHLKGWKEGFFFLS--SSAPWPCQV 202
VFRHFF L L K GWY FR +++V LFTG+P+ +K WKE F F+S +APW C V
Sbjct: 220 PVFRHFFTLAPLPKGKGWYSFRARESVPALFTGLPSSVKAWKEEFLFVSPPPAAPWRCPV 279
Query: 203 RWGGPPSKSSIADPVLTGEEEKWAAKLLDKHRAAVDLRTYLTE 245
RW G PSK + +DP LT E E A+ L + + VDL+TYL+E
Sbjct: 280 RW-GTPSKEATSDPALT-EREAAVARRLTQGQGVVDLKTYLSE 320
>Os06g0174900
Length = 569
Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 99/213 (46%), Positives = 125/213 (58%), Gaps = 12/213 (5%)
Query: 41 SIADRIASSLRTQEAVDALCKKHGVPKGFAARPAGDLRACSTPPPGAVCVYKDALEAG-- 98
++A++ S LRT +A+ + + +P+GF A AGDL AC+ PPPGA VY A+E
Sbjct: 38 TVAEKTTSWLRTADALRDITGRCSIPRGFTALLAGDLPACAPPPPGAAFVYVAAMEEERL 97
Query: 99 MRVPLHPFACDVLRHFGLAPSEVTPNGWRIMAGFLVLSHHAGVP----PSLAVFRHFFKL 154
MR+PL PF VL HFGLAPS++TPN WR++AGF L AGV P L VFRHFF
Sbjct: 98 MRLPLQPFFAAVLAHFGLAPSQLTPNAWRLLAGFAALCRRAGVAPPPPPPLTVFRHFFTA 157
Query: 155 CLFKSNGWYHF--RGKDTVGLLFTGMP--THLKGWKEGFFFLSSSAPWPCQVRWGGPPSK 210
WY F RG + G LFT + T WKE F +SS APWPC VRWG P
Sbjct: 158 IGCPPGAWYSFRARGSASTGSLFTRLSNVTMNPWWKEQFILVSSPAPWPCPVRWGKPRKH 217
Query: 211 SSIADPVLTGEEEKWAAK-LLDKHRAAVDLRTY 242
++ PVLT E+ A K LL + + +DL TY
Sbjct: 218 ANF-PPVLTTAEKDMATKLLLARGSSLIDLTTY 249
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 71/153 (46%), Gaps = 47/153 (30%)
Query: 304 VKTEPESDTPRCSPSSVKKRK----------FEAEANAKDGTPPTPHGF-SCSASGLSSP 352
VK+EP+ D P C+PSS +K+K E + G P + +C P
Sbjct: 300 VKSEPDLDGPACAPSSSRKKKRKMVDDDAIAVEGPSGHGGGGGGWPALYPAC------LP 353
Query: 353 PPGFSAQKPTASDQDRKPMFSAQKPTASDHDRTPGHVPDKHDGDTADWKAARQLLQGIVT 412
PPGF + D DG WKAARQLLQG VT
Sbjct: 354 PPGFK------------------------------KLDDDDDGHEGGWKAARQLLQGAVT 383
Query: 413 PSRERQFPAAKPSDVVASSYVTLLQAANYATFS 445
RER F A+KP+DVVA+SYV +LQAAN+ FS
Sbjct: 384 ARRERAFAASKPADVVAASYVAMLQAANHVAFS 416
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.133 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,815,711
Number of extensions: 807688
Number of successful extensions: 3073
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 3050
Number of HSP's successfully gapped: 6
Length of query: 542
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 436
Effective length of database: 11,501,117
Effective search space: 5014487012
Effective search space used: 5014487012
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)