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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0307900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.13 (0.0414) R2 : 0.431
β1 : 2.33 (0.155) R2dD : 0.323 R2D : 0.2
β2 : 1.16 (0.108) R2dC : 0.148 R2C : 0.0629
β3 : 1.94 (0.185) R2dE : 0.181 R2E : -0.0221
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.25 (0.0951) R2dN8 : 0.0144 R2N8 : -0.0445
σ : 0.757
deviance : 264.48
__
_____
C
peak time of C : 19.3
E
wheather : temperature
threshold : 27.59
memory length : 211
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
252.95 0.747 4.19 1.95 0.965 2.18 1.14 2.72 0.103 20.1 24.5 261 -- --
262.44 0.755 4.14 2.35 1.04 1.87 0.99 -- 0.231 20 25.8 248 -- --
256.44 0.746 4.2 1.96 0.937 2.22 -- 2.65 0.111 19.9 24.4 229 -- --
264.48 0.757 4.13 2.33 1.16 1.94 -- -- 0.25 19.3 27.59 211 -- --
294.68 0.804 4.17 1.93 -- 2.13 -- 2.5 0.0635 -- 24.1 90 -- --
313.36 0.83 4.22 1.88 0.892 -- 1.2 -- -0.169 21.2 -- -- -- --
318.31 0.835 4.22 1.84 0.895 -- -- -- -0.169 21 -- -- -- --
305.19 0.817 4.13 2.26 -- 1.91 -- -- 0.138 -- 24.2 6 -- --
390.95 0.921 4.24 -- 0.875 1.23 -- -- -0.243 19.7 180 6 -- --
364.28 0.892 4.2 1.84 -- -- -- -- -0.175 -- -- -- -- --
407.35 0.944 4.27 -- 0.893 -- -- -- -0.374 21.2 -- -- -- --
429.48 0.968 4.2 -- -- 1.11 -- -- -0.179 -- 25.5 6 -- --
453.5 0.994 4.24 -- -- -- -- -- -0.379 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 251.39 temperature 25 270 < th dose dependent rect. 24 23
8 253.05 wind 9 43200 > th dose independent rect. 17 14
11 253.41 temperature 25 270 < th dose dependent no NA NA
14 253.60 wind 9 43200 > th dose dependent rect. 17 14
16 253.73 temperature 25 270 < th dose dependent rect. 13 23
17 253.78 temperature 25 270 < th dose dependent rect. 11 23
23 254.09 temperature 25 270 < th dose dependent rect. 15 23
32 254.54 temperature 30 30 < th dose dependent rect. 7 23
33 254.57 wind 9 43200 < th dose independent rect. 17 14
35 254.67 temperature 25 270 < th dose dependent rect. 8 23
42 255.00 temperature 30 30 < th dose dependent rect. 5 23
43 255.05 temperature 30 10 < th dose dependent rect. 13 23
50 255.24 temperature 30 10 < th dose dependent rect. 17 23
51 255.28 temperature 30 30 < th dose dependent rect. 3 23
59 255.43 temperature 30 10 < th dose dependent no NA NA
65 255.59 temperature 30 10 < th dose dependent rect. 15 23
72 255.71 temperature 30 30 < th dose dependent rect. 11 23
90 256.16 temperature 30 10 < th dose dependent rect. 21 23
96 256.33 temperature 30 30 < th dose dependent rect. 9 23
98 256.36 wind 9 43200 > th dose dependent rect. 17 7
108 256.53 wind 9 43200 > th dose independent rect. 17 7
109 256.53 temperature 20 1440 > th dose dependent rect. 17 6
113 256.56 temperature 30 10 < th dose dependent rect. 19 23
115 256.57 temperature 25 720 < th dose dependent rect. 5 19
133 256.93 temperature 30 1440 < th dose dependent rect. 17 6
181 257.37 temperature 30 10 < th dose dependent rect. 1 23
185 257.39 wind 9 43200 > th dose independent sin 12 NA
188 257.40 temperature 15 1440 > th dose dependent rect. 21 2
211 257.55 temperature 30 1440 < th dose dependent rect. 21 2
244 257.74 wind 9 43200 < th dose independent sin 12 NA
259 257.83 temperature 15 10 > th dose dependent no NA NA
301 258.08 wind 9 43200 < th dose independent rect. 18 6
311 258.15 temperature 15 720 > th dose dependent rect. 15 18
367 258.49 wind 7 43200 > th dose dependent sin 12 NA
409 258.69 temperature 15 1440 > th dose dependent sin 15 NA
500 259.07 temperature 30 1440 < th dose dependent sin 15 NA
615 259.37 wind 5 43200 > th dose independent sin 13 NA
712 259.70 temperature 30 1440 < th dose dependent rect. 16 17
725 259.73 wind 5 43200 > th dose dependent rect. 14 20
846 260.10 wind 5 43200 < th dose independent sin 13 NA
895 260.21 wind 9 43200 > th dose dependent rect. 20 10
924 260.26 wind 9 43200 > th dose dependent rect. 14 18